Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p14740 Brassica napus HOM05D002855 ORTHO05D032761 2.4e-198 695.3 348 100.0
BcaC02g11494 Brassica carinata HOM05D002855 ORTHO05D032761 7.6e-192 673.7 339 100.0
A04p24330 Brassica napus HOM05D002855 ORTHO05D032761 1.9e-150 536.2 281 96.8
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 1.5e-139 500.0 305 84.6
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 4.2e-134 481.9 299 83.6
A06p21220 Brassica napus HOM05D002855 ORTHO05D004406 5.5e-134 481.5 305 82.3
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 9.4e-134 480.7 299 83.6
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 9.4e-134 480.7 299 83.6
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 2.0e-128 463.0 305 79.3
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 1.5e-110 403.7 314 69.1
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 4.3e-94 349.0 308 64.3
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 1.1e-92 344.4 314 63.7
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 1.6e-88 330.5 308 61.7
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 3.9e-87 325.9 310 62.3
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 7.3e-86 321.6 311 62.7
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 1.9e-46 190.7 326 41.1
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 1.4e-44 184.5 312 42.0
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 4.4e-30 136.3 308 37.0
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 1.7e-21 107.8 386 32.1
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 8.2e-21 105.5 355 33.8
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 9.1e-20 102.1 357 33.1
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 5.9e-19 99.4 354 30.2
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 6.5e-18 95.9 351 31.9
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 1.1e-17 95.1 311 31.5
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 3.2e-17 93.6 116 57.8
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.2e-17 93.6 351 31.1
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 4.2e-17 93.2 116 57.8
A05p10970 Brassica napus HOM05D000295 ORTHO05D014480 5.5e-17 92.8 61 85.2
C03p33030 Brassica napus HOM05D003192 ORTHO05D014480 5.5e-17 92.8 61 85.2
BraA05t20043Z Brassica rapa HOM05D000295 ORTHO05D014480 5.5e-17 92.8 61 85.2
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.7e-16 90.5 346 30.1
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 6.1e-16 89.4 346 30.3
BcaB03g12309 Brassica carinata HOM05D003192 ORTHO05D003596 8.0e-16 89.0 120 52.5
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 1.0e-15 88.6 311 29.3
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 2.3e-15 87.4 346 30.9
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.3e-15 87.4 354 29.1
Sp7g35710 Schrenkiella parvula HOM05D003192 ORTHO05D003596 2.3e-15 87.4 59 81.4
Thhalv10027141m.g Eutrema salsugineum HOM05D003192 ORTHO05D003596 4.0e-15 86.7 59 79.7
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 8.8e-15 85.5 392 26.8
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 1.2e-14 85.1 390 29.2
BcaB03g12313 Brassica carinata HOM05D003192 ORTHO05D014480 1.2e-14 85.1 59 86.4
BcaC01g00350 Brassica carinata HOM05D003192 ORTHO05D003596 1.2e-14 85.1 59 86.4
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 1.2e-14 85.1 59 86.4
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 1.2e-14 85.1 59 86.4
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 1.2e-14 85.1 387 28.2
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 2.0e-14 84.3 312 30.4
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 1.7e-13 81.3 356 28.7
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 1.7e-13 81.3 356 28.7
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 4.8e-13 79.7 354 28.8
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 3.1e-12 77.0 356 29.8
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 4.1e-12 76.6 317 30.3
AT4G38062 Arabidopsis thaliana HOM05D003192 ORTHO05D003596 5.3e-12 76.3 59 74.6
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.2e-11 75.1 357 30.0
AL7G12570 Arabidopsis lyrata HOM05D003192 ORTHO05D003596 2.7e-11 73.9 59 71.2
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 2.7e-11 73.9 317 28.7
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 3.5e-11 73.6 323 29.7
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 4.5e-11 73.2 348 27.9
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 5.9e-11 72.8 349 28.9
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 7.7e-11 72.4 351 27.6
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 7.7e-11 72.4 354 28.0
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 1.0e-10 72.0 353 28.9
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 1.3e-10 71.6 313 30.7
Carub.0007s0215 Capsella rubella HOM05D003192 ORTHO05D003596 2.2e-10 70.9 59 67.8
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.9e-10 70.5 356 29.8
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 5.0e-10 69.7 355 27.6
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 5.0e-10 69.7 314 28.7
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 8.5e-10 68.9 369 27.1
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 8.5e-10 68.9 306 29.1
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 7.2e-09 65.9 270 30.0
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 9.4e-09 65.5 314 26.8
Thecc.01G090500 Theobroma cacao HOM05D003192 ORTHO05D003596 9.4e-09 65.5 66 59.1
THA.LOC104807671 Tarenaya hassleriana HOM05D003192 ORTHO05D003596 1.2e-08 65.1 58 62.1
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 1.6e-08 64.7 335 29.9
Aa31LG6G15020 Aethionema arabicum HOM05D003192 ORTHO05D003596 2.1e-08 64.3 59 62.7
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 2.1e-08 64.3 347 26.2
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 6.1e-08 62.8 337 27.6
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 8.0e-08 62.4 311 26.7
Duzib147G1583 Durio zibethinus HOM05D003192 ORTHO05D003596 8.0e-08 62.4 82 50.0
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 1.4e-07 61.6 374 27.8
CARHR246480 Cardamine hirsuta HOM05D003192 ORTHO05D003596 3.0e-07 60.5 54 66.7
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 5.2e-07 59.7 268 28.4
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 6.8e-07 59.3 351 26.5
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 6.8e-07 59.3 351 27.9
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 8.8e-07 58.9 344 28.2
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 1.2e-06 58.5 323 25.4
Gorai.003G037800 Gossypium raimondii HOM05D003192 ORTHO05D003596 1.2e-06 58.5 66 57.6
Duzib264G0817 Durio zibethinus HOM05D003192 ORTHO05D014480 1.5e-06 58.2 65 52.3
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 2.0e-06 57.8 306 25.5
Manes.13G100000 Manihot esculenta HOM05D003192 ORTHO05D003596 2.0e-06 57.8 59 57.6
Gohir.A11G207000 Gossypium hirsutum HOM05D003192 ORTHO05D003596 2.6e-06 57.4 66 53.0
CSS0015283 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 3.4e-06 57.0 80 50.0
Aqoxy5G01385 Aquilegia oxysepala HOM05D003192 ORTHO05D003596 4.4e-06 56.6 82 47.6
vmacro14495 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 5.7e-06 56.2 314 26.8
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 7.5e-06 55.8 312 25.6
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 9.8e-06 55.5 232 29.7


User provided reference genes

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