Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 7.1e-125 450.7 236 100.0
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 3.5e-116 421.8 251 90.8
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 1.0e-91 340.5 275 69.1
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 8.7e-91 337.4 283 66.8
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 8.7e-91 337.4 283 66.8
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 1.1e-90 337.0 283 67.1
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 4.5e-87 325.1 286 65.4
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 1.3e-83 313.5 286 62.6
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 2.5e-82 309.3 283 64.0
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 2.5e-82 309.3 283 64.0
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 2.2e-81 306.2 286 63.6
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 2.0e-74 283.1 251 67.3
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 4.3e-74 282.0 244 62.7
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 3.8e-70 268.9 285 56.8
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 8.2e-65 251.1 285 53.7
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 1.5e-63 246.9 318 50.0
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 1.6e-44 183.7 244 47.1
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 9.8e-42 174.5 288 41.3
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 3.7e-41 172.6 288 41.0
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 3.7e-41 172.6 290 40.7
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 4.9e-41 172.2 288 40.6
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 1.8e-40 170.2 241 43.6
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 1.8e-40 170.2 259 42.5
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 4.1e-40 169.1 289 40.5
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 2.0e-39 166.8 263 40.3
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 1.7e-38 163.7 238 41.2
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 1.7e-38 163.7 240 41.7
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 8.6e-38 161.4 240 41.7
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 2.5e-37 159.8 277 39.7
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 3.3e-37 159.5 292 38.0
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 5.6e-37 158.7 257 38.9
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 5.6e-37 158.7 287 38.7
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 7.2e-37 158.3 294 39.5
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 7.2e-37 158.3 246 39.4
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 2.1e-36 156.8 294 37.1
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 2.1e-36 156.8 298 38.6
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 2.1e-36 156.8 234 40.2
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 2.8e-36 156.4 294 38.8
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 3.6e-36 156.0 256 39.8
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 6.1e-36 155.2 244 40.2
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 8.0e-36 154.8 289 36.0
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 1.8e-35 153.7 239 38.5
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 3.0e-35 152.9 247 38.5
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 4.0e-35 152.5 289 40.1
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 6.8e-35 151.8 295 37.3
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 8.9e-35 151.4 289 38.1
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 8.9e-35 151.4 244 40.2
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 1.2e-34 151.0 283 37.8
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 1.5e-34 150.6 255 36.5
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 2.0e-34 150.2 254 40.6
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 2.0e-34 150.2 290 37.9
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 2.6e-34 149.8 239 38.1
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 2.6e-34 149.8 288 38.5
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 3.4e-34 149.4 294 35.7
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 4.4e-34 149.1 263 37.3
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 5.7e-34 148.7 254 40.2
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 5.7e-34 148.7 278 37.8
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 7.5e-34 148.3 250 38.4
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 9.8e-34 147.9 238 40.3
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 9.8e-34 147.9 239 40.6
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 9.8e-34 147.9 239 40.6
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 9.8e-34 147.9 245 38.8
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 1.3e-33 147.5 254 36.2
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.7e-33 147.1 289 37.7
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 1.7e-33 147.1 284 35.6
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 2.2e-33 146.7 287 37.6
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 2.9e-33 146.4 251 37.8
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 6.4e-33 145.2 237 39.7
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 1.4e-32 144.1 258 38.8
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 1.8e-32 143.7 242 36.4
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 3.2e-32 142.9 291 36.4
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 4.1e-32 142.5 260 36.5
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 3.5e-31 139.4 234 37.6
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 3.5e-31 139.4 248 38.7
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 3.5e-31 139.4 248 38.3
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 3.5e-31 139.4 238 37.4
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 7.8e-31 138.3 283 36.0
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 1.0e-30 137.9 231 39.0
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 1.7e-30 137.1 240 37.9
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 1.7e-30 137.1 283 34.6
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 2.3e-30 136.7 282 35.5
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 3.0e-30 136.3 230 38.3
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 3.0e-30 136.3 241 36.9
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 6.6e-30 135.2 230 37.8
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 4.3e-29 132.5 132 53.0
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 4.3e-29 132.5 227 40.5
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 7.3e-29 131.7 236 37.3
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 9.5e-29 131.3 137 50.4
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 1.6e-28 130.6 288 34.0
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 2.1e-28 130.2 268 32.8
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 4.7e-28 129.0 225 35.6
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 1.8e-27 127.1 228 37.7
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 2.3e-27 126.7 269 32.3
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 6.8e-27 125.2 228 33.8
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 3.4e-26 122.9 290 35.2
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 3.4e-26 122.9 221 35.7
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 3.4e-26 122.9 131 47.3
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 4.4e-26 122.5 282 33.0
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 2.9e-25 119.8 159 42.8
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 3.7e-25 119.4 217 37.3
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 4.9e-25 119.0 132 47.0
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 4.9e-25 119.0 131 44.3
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 1.1e-24 117.9 230 33.9
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 1.1e-24 117.9 223 35.0
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 1.9e-24 117.1 273 32.6
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 2.4e-24 116.7 253 36.0
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 3.2e-24 116.3 226 36.7
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 2.0e-23 113.6 236 35.2
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 2.0e-23 113.6 141 45.4
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 6.0e-23 112.1 281 32.0
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 3.0e-22 109.8 132 44.7
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 1.5e-21 107.5 133 42.1
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 1.9e-21 107.1 134 43.3
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 1.9e-21 107.1 134 43.3
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 1.9e-21 107.1 325 30.5
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.5e-21 106.7 109 49.5
BraA05t20057Z Brassica rapa HOM05D005274 ORTHO05D006485 1.6e-20 104.0 86 68.6
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 1.2e-18 97.8 211 35.1
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 2.2e-17 93.6 215 32.1
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 3.7e-17 92.8 275 29.5
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 4.9e-17 92.4 278 30.9
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 3.5e-15 86.3 132 35.6
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 7.8e-15 85.1 198 33.3
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 2.3e-14 83.6 132 34.8
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 6.6e-14 82.0 60 61.7
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 9.5e-13 78.2 88 48.9
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 2.8e-12 76.6 139 36.0
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 2.6e-10 70.1 211 29.9
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 1.1e-08 64.7 96 35.4
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 2.4e-08 63.5 56 51.8
CDE04G1865 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 5.4e-08 62.4 56 48.2
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 3.9e-06 56.2 77 41.6


User provided reference genes

Program Settings