Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p14240 Brassica napus HOM05D001016 ORTHO05D026968 1.4e-17 91.7 41 100.0
BolC4t23010H Brassica oleracea HOM05D001016 ORTHO05D026968 2.7e-16 87.4 40 95.0
Actinidia07704 Actinidia chinensis HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Actinidia39581 Actinidia chinensis HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Aa31LG10G6800 Aethionema arabicum HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
ATR1098G091 Amborella trichopoda HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Aqoxy1G01687 Aquilegia oxysepala HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
AL1G44020 Arabidopsis lyrata HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
AL4G30570 Arabidopsis lyrata HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
AT1G30120 Arabidopsis thaliana HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
AT2G34590 Arabidopsis thaliana HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
arahy.Tifrunner.gnm1.ann1.24C55C Arachis hypogaea HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
EL10Ac8g19663 Beta vulgaris HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
BcaB03g12195 Brassica carinata HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
BcaB07g32614 Brassica carinata HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
BcaC01g00156 Brassica carinata HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
BcaC05g27038 Brassica carinata HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
A08p24700 Brassica napus HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
C03p76400 Brassica napus HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
C05p28950 Brassica napus HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
BolC3t19895H Brassica oleracea HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
BolC5t31617H Brassica oleracea HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
BraA08t34425Z Brassica rapa HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Carub.0001s2834 Capsella rubella HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Carub.0004s1627 Capsella rubella HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
CARHR029290 Cardamine hirsuta HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
CARHR128690 Cardamine hirsuta HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
AUR62002730 Chenopodium quinoa HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
AUR62002731 Chenopodium quinoa HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
AUR62022407 Chenopodium quinoa HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
AUR62030181 Chenopodium quinoa HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
DCAR_007887 Daucus carota HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Dinv32238 Davidia involucrata HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Thhalv10007796m.g Eutrema salsugineum HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Thhalv10016731m.g Eutrema salsugineum HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Lj6g0024917 Lotus japonicus HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Nn3g20469 Nelumbo nucifera HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Oeu052363.1 Olea europaea HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Oeu058433.1 Olea europaea HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
PSO017G6714 Papaver somniferum HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
PSO384G1207 Papaver somniferum HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
PSO541G5613 Papaver somniferum HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
PSO675G8635 Papaver somniferum HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Sp1g25980 Schrenkiella parvula HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Sp4g16860 Schrenkiella parvula HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
TAR626G0024 Trochodendron aralioides HOM05D001016 ORTHO05D004071 1.8e-07 58.2 40 72.5
Atru.chr10.1195 Acer truncatum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Ah.09g231770 Amaranthus hybridus HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
arahy.Tifrunner.gnm1.ann1.IZT7WB Arachis hypogaea HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
arahy.Tifrunner.gnm1.ann1.KY59Q5 Arachis hypogaea HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
arahy.Tifrunner.gnm1.ann1.W1W0Y7 Arachis hypogaea HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
MSTRG.14272 Avicennia marina HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
CSS0003349 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
CSS0036432 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
CANSAT35G1281 Cannabis sativa HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
CAN.G68.10 Capsicum annuum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
CAN.G880.3 Capsicum annuum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Cpa.g.sc246.2 Carica papaya HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Cfa000933 Carpinus fangiana HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
CiPaw.09G122500 Carya illinoinensis HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
CDE01G0568 Ceratophyllum demersum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Ca_18175_v3 Cicer arietinum L. HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Ciclev10015440m.g Citrus clementina HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Cc03_g15970 Coffea canephora HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
COL.COLO4_31054 Corchorus olitorius HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Haze_05616 Corylus avellana HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
MELO3C002746.2 Cucumis melo HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
CsaV3_1G032330 Cucumis sativus L. HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
DCAR_003906 Daucus carota HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
DCAR_003907 Daucus carota HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Dinv30760 Davidia involucrata HOM05D001016 ORTHO05D027033 2.3e-07 57.8 40 70.0
Duzib192G0341 Durio zibethinus HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Migut.D01762 Erythranthe guttata HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Eucgr.E01909 Eucalyptus grandis HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
FvH4_3g05390 Fragaria vesca HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
FAN11G0472 Fragaria x ananassa HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
FAN16G1622 Fragaria x ananassa HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
FAN21G2759 Fragaria x ananassa HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
FAN25G0750 Fragaria x ananassa HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Glyma.05G141000 Glycine max HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Glyma.08G096300 Glycine max HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Glyma.14G092100 Glycine max HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Glyma.17G231400 Glycine max HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Gohir.A05G147900 Gossypium hirsutum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Gohir.A06G138500 Gossypium hirsutum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Gohir.A06G196700 Gossypium hirsutum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Gohir.D05G150366 Gossypium hirsutum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Gohir.D05G150432 Gossypium hirsutum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Gohir.D06G143200 Gossypium hirsutum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Gohir.D06G204200 Gossypium hirsutum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Gorai.009G154500 Gossypium raimondii HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Gorai.010G167000 Gossypium raimondii HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Gorai.010G238200 Gossypium raimondii HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
HanXRQChr16g0525591 Helianthus annuus HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
HanXRQChr17g0564651 Helianthus annuus HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Lsat_1_v5_gn_4_29381 Lactuca sativa HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Lj2P303T12 Lonicera japonica HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Lj9P196T8 Lonicera japonica HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Lj4g0002862 Lotus japonicus HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Lalb_Chr07g0187621 Lupinus albus HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Lalb_Chr12g0206901 Lupinus albus HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Lalb_Chr13g0293861 Lupinus albus HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
MBI18_g24472_MAGBIO Magnolia biondii HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
MD05G1282600 Malus domestica HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Manes.15G122600 Manihot esculenta HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Medtr3g076630 Medicago truncatula HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Nn8g40138 Nelumbo nucifera HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Os03g0645100 Oryza sativa ssp. japonica HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Os12g0616900 Oryza sativa ssp. japonica HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Peaxi162Scf00317g00114 Petunia axillaris HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Peaxi162Scf00394g00118 Petunia axillaris HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Phvul.006G165600 Phaseolus vulgaris HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Psat7g082880 Pisum sativum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Potri.004G129800 Populus trichocarpa HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Potri.017G076500 Populus trichocarpa HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Prupe.4G082200 Prunus persica HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
PGR031G1194 Punica granatum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
QL05p057475 Quercus lobata HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Rhsim13G0114500 Rhododendron simsii HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Rhsim13G0114600 Rhododendron simsii HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
RcHm_v2.0_Chr5g0014341 Rosa chinensis HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Sabra17G0068500 Salix brachista HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
SalBow6G6196 Salvia bowleyana HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
SalBow8G3613 Salvia bowleyana HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Sed0004585 Sechium edule HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Sed0007894 Sechium edule HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Hund21544 Selenicereus undatus HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Sc09g0007490 Simmondsia chinensis HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Solyc04g008590.3 Solanum lycopersicum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Solyc08g016750.3 Solanum lycopersicum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Sopen04g003750 Solanum pennellii HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Sopen08g007290 Solanum pennellii HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
PGSC0003DMG400007488 Solanum tuberosum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
PGSC0003DMG400031370 Solanum tuberosum HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Thecc.06G148900 Theobroma cacao HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
TPR.G9587 Trifolium pratense HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
TWI09G0448 Tripterygium wilfordii HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
TWI53G0035 Tripterygium wilfordii HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
VMungo0540G0687 Vigna mungo HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Zm00001eb031900 Zea mays HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Zm00001eb050410 Zea mays HOM05D001016 ORTHO05D004071 2.3e-07 57.8 40 70.0
Cc05_g10200 Coffea canephora HOM05D001016 ORTHO05D004071 4.0e-07 57.0 40 70.0
TAR624G0510 Trochodendron aralioides HOM05D001016 ORTHO05D004071 4.0e-07 57.0 40 70.0
HanXRQChr04g0114361 Helianthus annuus HOM05D001016 ORTHO05D004071 5.2e-07 56.6 40 67.5
unitig_62.g23082 Utricularia gibba HOM05D001016 ORTHO05D004071 5.2e-07 56.6 40 67.5
HPP92_001887 Vanilla planifolia HOM05D001016 ORTHO05D004071 5.2e-07 56.6 40 67.5
ECA234G4093 Erigeron canadensis HOM05D001016 ORTHO05D004071 6.7e-07 56.2 40 70.0
Migut.M00657 Erythranthe guttata HOM05D001016 ORTHO05D004071 6.7e-07 56.2 40 67.5
Lsat_1_v5_gn_7_28120 Lactuca sativa HOM05D001016 ORTHO05D004071 6.7e-07 56.2 40 67.5
Manes.17G071300 Manihot esculenta HOM05D001016 ORTHO05D004071 6.7e-07 56.2 40 67.5
Sabra04G0087800 Salix brachista HOM05D001016 ORTHO05D004071 6.7e-07 56.2 40 67.5
THA.LOC104812671 Tarenaya hassleriana HOM05D001016 ORTHO05D004071 6.7e-07 56.2 40 67.5
vmacro03332 Vaccinium macrocarpon HOM05D001016 ORTHO05D004071 6.7e-07 56.2 40 67.5
A09p36380 Brassica napus HOM05D001016 ORTHO05D004071 8.8e-07 55.8 40 70.0
BraA09t39162Z Brassica rapa HOM05D001016 ORTHO05D004071 8.8e-07 55.8 40 70.0
ECA234G4142 Erigeron canadensis HOM05D001016 ORTHO05D004071 8.8e-07 55.8 40 67.5
Nitab4.5_0000348g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 8.8e-07 55.8 40 67.5
Nitab4.5_0011303g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 8.8e-07 55.8 40 67.5
SalBow8G3585 Salvia bowleyana HOM05D001016 ORTHO05D004071 8.8e-07 55.8 40 65.0
AUR62042164 Chenopodium quinoa HOM05D001016 ORTHO05D004071 1.1e-06 55.5 39 71.8
MSTRG.7495 Avicennia marina HOM05D001016 ORTHO05D026968 1.5e-06 55.1 40 67.5
MD10G1260900 Malus domestica HOM05D001016 ORTHO05D004071 1.5e-06 55.1 40 65.0
MSTRG.12851 Avicennia marina HOM05D001016 ORTHO05D004071 2.6e-06 54.3 40 65.0
ClCG03G006760 Citrullus lanatus HOM05D001016 ORTHO05D004071 2.6e-06 54.3 40 67.5
Duzib235G1429 Durio zibethinus HOM05D001016 ORTHO05D004071 4.4e-06 53.5 40 67.5
AagrBONN_evm.TU.Sc2ySwM_228.4010 Anthoceros agrestis HOM05D001016 ORTHO05D004071 7.5e-06 52.8 40 67.5
SGA_v2.0_scaffold4G02138 Striga asiatica HOM05D001016 ORTHO05D004071 7.5e-06 52.8 40 65.0
THA.LOC104814305 Tarenaya hassleriana HOM05D001016 ORTHO05D004071 7.5e-06 52.8 40 65.0
Nitab4.5_0003681g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 9.7e-06 52.4 40 65.0


User provided reference genes

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