Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.3e-158 563.1 308 100.0
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 4.1e-157 558.1 310 99.4
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 5.4e-157 557.8 309 99.4
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 2.5e-154 548.9 308 97.1
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 6.1e-153 544.3 315 94.0
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 4.7e-145 518.1 309 90.3
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 9.8e-143 510.4 308 87.3
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 3.7e-142 508.4 308 89.9
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 1.8e-141 506.1 308 87.0
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 4.6e-140 501.5 308 87.3
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 4.4e-135 485.0 308 85.7
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 1.7e-134 483.0 308 82.1
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 2.9e-134 482.3 308 85.7
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 4.9e-134 481.5 308 86.4
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 1.4e-128 463.4 308 79.9
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 2.0e-127 459.5 308 79.5
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 2.0e-127 459.5 308 79.2
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.3e-126 456.8 308 79.5
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 1.3e-123 446.8 310 78.7
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 2.3e-123 446.0 308 76.3
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 6.6e-123 444.5 308 76.3
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 1.9e-122 443.0 303 77.9
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 3.3e-122 442.2 307 77.2
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 3.3e-122 442.2 307 77.2
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 2.8e-121 439.1 303 77.9
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 3.6e-121 438.7 310 77.4
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 8.1e-121 437.6 308 76.6
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.4e-120 436.0 291 78.4
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 3.1e-120 435.6 292 78.4
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 3.1e-120 435.6 291 78.0
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 5.2e-120 434.9 308 76.3
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 8.9e-120 434.1 293 77.5
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.0e-119 433.0 291 78.0
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 2.6e-119 432.6 310 76.8
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 3.4e-119 432.2 308 74.7
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 4.4e-119 431.8 293 77.5
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 5.8e-119 431.4 308 76.9
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 5.8e-119 431.4 308 75.3
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 7.6e-119 431.0 291 78.7
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 7.6e-119 431.0 292 77.4
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 1.7e-118 429.9 307 76.5
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 8.4e-118 427.6 301 75.7
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.6e-116 423.3 308 75.0
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 2.1e-116 422.9 308 71.8
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.0e-115 420.6 308 73.1
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 1.3e-115 420.2 293 76.8
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 3.0e-115 419.1 293 77.1
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.5e-114 416.8 293 74.4
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.9e-114 416.4 308 75.6
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 2.5e-114 416.0 308 71.8
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 3.3e-114 415.6 292 76.7
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 7.3e-114 414.5 293 78.2
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 2.1e-113 412.9 291 74.6
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 2.1e-113 412.9 291 74.6
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 4.7e-113 411.8 293 73.7
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.1e-112 410.6 308 71.1
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.1e-112 410.6 292 77.7
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 1.4e-112 410.2 291 75.6
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 2.4e-112 409.5 290 77.9
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.1e-112 409.1 308 71.1
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.1e-112 409.1 308 71.1
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 1.2e-111 407.1 304 69.1
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 2.6e-111 406.0 301 71.4
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 2.6e-111 406.0 293 72.7
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 4.4e-111 405.2 293 74.1
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 1.3e-110 403.7 291 74.9
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 1.3e-110 403.7 293 72.4
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.3e-110 403.7 291 74.9
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 2.2e-110 402.9 293 73.4
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.1e-109 400.6 293 72.4
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 9.3e-109 397.5 293 72.0
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 2.1e-108 396.4 308 67.2
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 2.1e-108 396.4 293 71.7
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 7.8e-108 394.4 293 73.0
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.7e-107 393.3 308 69.5
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 3.9e-107 392.1 308 66.9
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 6.6e-107 391.3 300 70.7
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 6.6e-107 391.3 308 66.9
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 6.6e-107 391.3 308 66.6
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 1.1e-106 390.6 282 72.7
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.9e-106 389.8 293 70.6
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 1.9e-106 389.8 308 66.6
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 3.3e-106 389.0 308 66.6
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 3.3e-106 389.0 308 66.6
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 7.3e-106 387.9 308 66.6
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 8.1e-105 384.4 302 68.5
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.1e-105 384.4 282 76.6
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.8e-104 383.3 308 65.9
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 3.1e-104 382.5 282 71.3
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 4.5e-103 378.6 292 69.9
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 1.1e-101 374.0 304 65.1
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 3.2e-101 372.5 291 66.0
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 7.1e-101 371.3 301 68.1
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 2.1e-100 369.8 308 66.2
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.0e-100 368.2 282 74.1
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 2.3e-99 366.3 302 66.6
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 7.4e-98 361.3 291 65.3
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 9.6e-98 360.9 308 61.7
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 3.7e-97 359.0 304 61.5
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 3.7e-97 359.0 300 64.3
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 5.3e-96 355.1 292 64.0
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 2.6e-95 352.8 291 62.5
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 2.4e-93 346.3 291 62.2
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 1.5e-90 337.0 274 67.5
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 9.0e-88 327.8 284 64.1
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.2e-87 327.4 282 61.0
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.2e-84 317.4 242 74.0
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 8.2e-81 304.7 304 56.6
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 3.8e-78 295.8 195 79.0
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 5.3e-72 275.4 299 55.2
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 7.7e-71 271.6 193 76.7
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 2.9e-70 269.6 290 51.7
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 9.1e-64 248.1 164 79.3
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 3.5e-63 246.1 159 83.6
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 4.5e-63 245.7 291 51.9
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 1.7e-57 227.3 339 44.0
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.2e-57 226.9 192 64.6
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 6.3e-57 225.3 196 61.2
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.9e-53 213.8 139 77.7
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 9.4e-53 211.5 292 45.5
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 1.4e-48 197.6 253 52.2
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 1.5e-45 187.6 114 88.6
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 1.4e-43 181.0 186 56.5
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 6.8e-43 178.7 146 68.5
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 4.4e-42 176.0 115 80.0
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 1.5e-34 151.0 215 43.7
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 1.4e-32 144.4 182 42.3
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.5e-31 139.8 96 77.1
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 7.8e-31 138.7 172 48.8
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 3.6e-28 129.8 100 67.0
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 6.1e-28 129.0 86 79.1
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 5.4e-24 115.9 60 91.7
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 7.3e-21 105.5 293 30.4
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 4.0e-19 99.8 303 30.7
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 7.0e-16 89.0 172 36.0
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.6e-15 87.8 150 40.7
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 6.0e-15 85.9 98 55.1
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 4.3e-13 79.7 57 64.9
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 3.6e-12 76.6 195 33.3
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 2.3e-11 73.9 50 70.0


User provided reference genes

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