Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2734.1 1400 100.0
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2716.0 1400 99.0
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2711.4 1400 99.1
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2707.6 1401 99.2
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2703.3 1401 99.0
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2665.2 1410 97.4
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2606.2 1401 94.6
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2597.4 1403 94.8
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2589.7 1402 94.9
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2520.3 1368 94.7
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2466.4 1431 89.6
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2322.4 1407 84.6
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2230.7 1403 81.0
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2230.3 1402 81.3
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2226.8 1403 81.4
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2215.7 1404 80.2
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2206.0 1403 80.1
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2206.0 1404 80.0
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2205.3 1405 79.6
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2201.0 1402 79.7
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2200.2 1403 80.0
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2200.2 1402 79.8
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2197.9 1403 79.8
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2196.8 1414 79.1
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2194.1 1403 80.1
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2188.7 1403 79.8
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2188.3 1403 79.7
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2181.4 1402 79.0
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2181.4 1403 79.3
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2181.0 1403 79.3
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2171.7 1403 78.8
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2169.0 1403 78.5
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2165.6 1402 78.0
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2163.3 1403 78.5
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2163.3 1408 77.9
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2162.1 1403 78.9
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2158.6 1355 80.8
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2156.3 1405 77.7
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2150.2 1403 78.5
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2148.2 1403 77.8
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2147.9 1406 77.5
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2147.1 1405 77.5
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2140.2 1405 77.0
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2139.4 1405 77.4
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2133.2 1405 76.7
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2131.7 1404 77.5
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2125.9 1402 76.5
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2120.9 1407 76.8
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2119.7 1407 76.0
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2118.6 1495 73.5
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2117.4 1407 76.1
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2114.0 1401 76.4
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2112.8 1405 76.2
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2111.3 1403 76.3
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2108.6 1402 76.4
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2104.7 1419 77.1
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2098.2 1402 76.5
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2094.7 1403 76.1
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2091.6 1404 76.4
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2089.3 1403 75.7
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2088.2 1404 76.1
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2087.4 1448 74.9
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2087.0 1392 77.1
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2084.7 1415 75.5
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2080.1 1433 74.4
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2080.1 1427 74.5
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2075.8 1386 75.8
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2072.0 1416 74.3
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2066.2 1390 75.5
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2052.7 1498 71.6
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2050.0 1400 74.3
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2033.1 1411 74.1
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2013.8 1273 80.5
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 1997.2 1402 72.6
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 1989.9 1229 80.6
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 1947.6 1430 71.1
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1910.2 1296 74.8
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1907.9 1370 71.3
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 1906.7 1702 61.6
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1899.0 1369 70.9
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1897.1 1365 71.6
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1860.1 1461 67.4
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1843.9 1197 77.1
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1830.5 1342 70.1
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1822.0 1389 67.2
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1804.3 1387 69.1
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1779.2 1395 65.5
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1767.7 1392 65.5
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1677.9 1546 59.3
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1583.9 822 97.2
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1492.2 816 93.5
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1405.2 1159 60.6
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1364.4 945 73.9
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1349.0 1393 51.0
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1322.8 1333 51.6
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1303.1 990 69.2
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1302.0 1358 49.9
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1301.2 1413 48.5
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1209.1 715 84.8
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1094.7 896 62.1
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1083.6 775 72.4
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 7.5e-299 1031.2 809 68.5
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 4.3e-286 988.8 588 83.3
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 2.5e-278 963.0 824 57.3
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 4.1e-228 796.2 613 68.5
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.5e-209 734.6 534 75.8
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 8.3e-205 718.8 484 75.2
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.6e-192 677.9 564 62.8
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 2.0e-187 661.0 528 66.7
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 6.1e-184 649.4 1484 29.9
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.1e-146 523.5 367 72.5
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.1e-127 460.7 541 49.2
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.7e-104 385.6 550 46.7
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.8e-98 365.5 299 68.6
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 6.3e-96 357.1 277 66.4
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 4.5e-86 324.3 219 73.1
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.3e-85 322.8 192 78.6
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 3.5e-70 271.6 428 43.0
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.6e-60 237.7 145 78.6
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 1.1e-50 206.8 135 74.1
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 4.0e-42 178.3 89 95.5
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.9e-42 177.6 128 62.5
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 9.0e-34 150.6 118 68.6
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 1.2e-33 150.2 94 80.9
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 7.1e-31 141.0 83 83.1
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 2.7e-30 139.0 114 61.4
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.9e-28 132.9 147 46.9
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 2.4e-26 125.9 83 68.7
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 4.0e-26 125.2 154 51.3
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 5.3e-26 124.8 123 53.7
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 1.5e-25 123.2 138 49.3
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 9.3e-23 114.0 165 42.4
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 2.7e-22 112.5 88 62.5
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 7.9e-22 110.9 239 35.1
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.1e-21 108.2 68 80.9
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 2.5e-20 105.9 100 55.0
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.1e-18 99.0 142 52.1
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.8e-17 94.7 53 86.8
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.0e-16 94.0 124 45.2
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 1.1e-15 90.5 89 51.7
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.2e-15 89.0 50 90.0
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 2.3e-13 82.8 104 53.8
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.3e-11 77.0 45 82.2
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 1.4e-10 73.6 42 85.7
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 1.5e-09 70.1 102 41.2
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 1.7e-08 66.6 52 61.5
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 1.7e-08 66.6 52 61.5
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 49 71.4
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 3.2e-07 62.4 44 79.5
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 5.5e-07 61.6 54 55.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 1.2e-06 60.5 48 68.8


User provided reference genes

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