Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p13130 Brassica napus HOM05D003542 ORTHO05D004799 2.4e-231 805.1 384 100.0
BcaC02g11616 Brassica carinata HOM05D003542 ORTHO05D004799 1.4e-194 682.9 360 91.9
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 1.5e-185 652.9 335 94.0
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 4.4e-185 651.4 335 94.0
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 4.4e-185 651.4 335 94.0
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 5.8e-185 651.0 335 93.7
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 5.4e-183 644.4 335 92.5
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 5.4e-183 644.4 335 92.5
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 8.7e-181 637.1 362 86.7
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 1.5e-180 636.3 335 91.9
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 6.2e-179 630.9 335 89.9
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 1.4e-178 629.8 335 89.9
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 3.1e-178 628.6 335 89.6
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 3.1e-178 628.6 335 89.6
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 5.3e-178 627.9 335 90.7
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 4.4e-177 624.8 335 89.3
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 5.8e-177 624.4 335 89.9
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 1.2e-174 616.7 341 87.4
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 1.2e-174 616.7 341 87.4
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 1.2e-174 616.7 341 87.4
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 1.0e-173 613.6 341 86.5
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 1.3e-171 606.7 335 86.3
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 8.4e-168 594.0 355 81.7
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 1.8e-162 576.2 335 80.6
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 5.3e-162 574.7 327 81.7
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 5.3e-162 574.7 335 79.7
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 2.0e-161 572.8 329 82.4
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 5.8e-161 571.2 335 78.5
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 5.8e-161 571.2 335 79.1
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 7.6e-161 570.9 335 80.3
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 2.9e-160 568.9 341 78.0
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 3.8e-160 568.5 335 79.4
CSS0026658 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 6.5e-160 567.8 335 77.3
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 1.4e-159 566.6 335 79.1
Glyma.01G153600 Glycine max HOM05D003542 ORTHO05D004799 4.2e-159 565.1 331 80.7
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 5.5e-159 564.7 335 79.4
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 5.5e-159 564.7 335 78.5
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 9.3e-159 563.9 335 78.2
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 1.2e-158 563.5 331 80.4
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 2.7e-158 562.4 331 79.5
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 6.0e-158 561.2 335 78.5
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 6.0e-158 561.2 327 79.2
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 6.0e-158 561.2 366 73.2
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 7.9e-158 560.8 349 74.5
Oeu036053.1 Olea europaea HOM05D003542 ORTHO05D004799 1.0e-157 560.5 335 77.0
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 1.0e-157 560.5 335 78.8
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.3e-157 560.1 352 76.4
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 1.3e-157 560.1 337 77.4
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 1.3e-157 560.1 331 79.8
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 1.8e-157 559.7 335 77.3
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 1.8e-157 559.7 335 77.6
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 3.0e-157 558.9 331 78.9
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 5.1e-157 558.1 352 75.9
CiPaw.11G074400 Carya illinoinensis HOM05D003542 ORTHO05D004799 1.1e-156 557.0 335 77.9
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 1.1e-156 557.0 335 77.0
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 1.5e-156 556.6 335 76.4
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 1.5e-156 556.6 329 78.1
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 2.5e-156 555.8 335 77.6
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 2.5e-156 555.8 335 77.3
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 3.3e-156 555.4 335 77.6
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 4.3e-156 555.1 350 75.1
THA.LOC104814389 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 4.3e-156 555.1 340 76.2
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 5.7e-156 554.7 335 78.5
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 5.7e-156 554.7 335 77.0
Cc08_g05890 Coffea canephora HOM05D003542 ORTHO05D004799 7.4e-156 554.3 341 75.7
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 7.4e-156 554.3 352 75.3
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 1.3e-155 553.5 335 77.0
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 2.8e-155 552.4 331 76.4
Lalb_Chr05g0215151 Lupinus albus HOM05D003542 ORTHO05D004799 2.8e-155 552.4 328 78.0
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 4.8e-155 551.6 333 76.6
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 8.2e-155 550.8 335 75.2
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 1.1e-154 550.4 335 75.5
SHI32767 Sapria himalayana HOM05D003542 ORTHO05D004799 1.8e-154 549.7 336 76.8
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 2.4e-154 549.3 331 76.1
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 2.4e-154 549.3 331 76.7
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 3.1e-154 548.9 335 76.1
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 4.1e-154 548.5 335 74.6
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 4.1e-154 548.5 332 76.5
SalBow4G0461 Salvia bowleyana HOM05D003542 ORTHO05D004799 6.9e-154 547.7 334 74.9
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 9.0e-154 547.4 331 77.0
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.2e-153 547.0 336 74.7
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 1.2e-153 547.0 331 75.2
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 1.2e-153 547.0 335 74.6
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 1.5e-153 546.6 335 75.5
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 2.0e-153 546.2 335 75.2
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 2.6e-153 545.8 331 74.9
Medtr5g025590 Medicago truncatula HOM05D003542 ORTHO05D004799 2.6e-153 545.8 331 77.0
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 3.4e-153 545.4 332 76.2
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 4.5e-153 545.0 355 71.5
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 4.5e-153 545.0 335 74.9
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 7.6e-153 544.3 337 75.4
arahy.Tifrunner.gnm1.ann1.GAUN3U Arachis hypogaea HOM05D003542 ORTHO05D004799 1.0e-152 543.9 327 78.3
arahy.Tifrunner.gnm1.ann1.JPC2KC Arachis hypogaea HOM05D003542 ORTHO05D004799 1.0e-152 543.9 327 78.3
Lj8C8T8 Lonicera japonica HOM05D003542 ORTHO05D004799 1.0e-152 543.9 356 71.9
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 2.2e-152 542.7 331 76.4
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 2.9e-152 542.3 331 74.6
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 3.8e-152 542.0 335 75.5
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 8.4e-152 540.8 331 75.8
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.9e-151 539.7 328 75.3
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 4.2e-151 538.5 331 74.9
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 4.2e-151 538.5 331 75.2
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 5.5e-151 538.1 328 75.0
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 5.5e-151 538.1 334 74.9
MBI15_g33455_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 1.6e-150 536.6 328 75.0
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 2.1e-150 536.2 328 74.4
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 4.6e-150 535.0 337 73.6
Aa31LG2G14340 Aethionema arabicum HOM05D003542 ORTHO05D004799 7.9e-150 534.3 335 73.4
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 1.0e-149 533.9 335 72.5
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 1.8e-149 533.1 339 74.0
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 2.3e-149 532.7 327 73.7
PSO502G0023 Papaver somniferum HOM05D003542 ORTHO05D004799 9.7e-148 527.3 328 74.4
PSO675G5456 Papaver somniferum HOM05D003542 ORTHO05D004799 3.7e-147 525.4 328 74.1
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 3.7e-147 525.4 335 74.3
EL10Ac5g12587 Beta vulgaris HOM05D003542 ORTHO05D004799 6.3e-147 524.6 345 71.3
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 9.0e-146 520.8 338 73.1
ATR0568G062 Amborella trichopoda HOM05D003542 ORTHO05D004799 3.2e-143 512.3 335 72.5
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 2.7e-142 509.2 346 71.4
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 1.8e-141 506.5 288 78.1
HPP92_014853 Vanilla planifolia HOM05D003542 ORTHO05D004799 1.1e-140 503.8 335 68.4
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 1.5e-140 503.4 326 73.9
CDE01G0249 Ceratophyllum demersum HOM05D003542 ORTHO05D004799 5.7e-140 501.5 326 70.2
Lalb_Chr16g0391801 Lupinus albus HOM05D003542 ORTHO05D004799 3.7e-139 498.8 327 69.1
Cc04_g11580 Coffea canephora HOM05D003542 ORTHO05D004799 1.2e-137 493.8 335 68.7
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 1.5e-137 493.4 326 72.4
Sed0027808 Sechium edule HOM05D003542 ORTHO05D004799 7.7e-137 491.1 344 66.6
vmacro00095 Vaccinium macrocarpon HOM05D003542 ORTHO05D004799 2.8e-131 472.6 373 63.5
TPR.G8991 Trifolium pratense HOM05D003542 ORTHO05D004799 7.0e-130 468.0 347 66.3
Cc04_g11570 Coffea canephora HOM05D003542 ORTHO05D004799 3.5e-129 465.7 330 64.2
SEGI_27818 Sequoiadendron giganteum HOM05D003542 ORTHO05D004799 2.5e-127 459.5 330 62.7
Mapoly0019s0126 Marchantia polymorpha HOM05D003542 ORTHO05D004799 9.4e-127 457.6 328 63.4
Cc04_g11590 Coffea canephora HOM05D003542 ORTHO05D004799 1.0e-125 454.1 336 61.6
Zm00001eb049170 Zea mays HOM05D003542 ORTHO05D004799 2.9e-120 436.0 260 74.2
Pp3c12_18450 Physcomitrium patens HOM05D003542 ORTHO05D004799 8.0e-118 427.9 339 59.9
Sed0024265 Sechium edule HOM05D003542 ORTHO05D004799 3.4e-116 422.5 256 72.3
AagrBONN_evm.TU.Sc2ySwM_344.2406 Anthoceros agrestis HOM05D003542 ORTHO05D004799 1.4e-114 417.2 329 57.4
SMO329G0009 Selaginella moellendorffii HOM05D003542 ORTHO05D004799 2.6e-108 396.4 350 55.4
TAR374G1176 Trochodendron aralioides HOM05D003542 ORTHO05D004799 1.3e-107 394.0 218 83.5
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 6.4e-99 365.2 290 55.5
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 1.2e-94 350.9 334 54.8
FAN18G0768 Fragaria x ananassa HOM05D003542 ORTHO05D004799 2.4e-90 336.7 337 54.0
MCO06G136 Micromonas commoda HOM05D003542 ORTHO05D004799 2.5e-87 326.6 286 54.2
HanXRQChr17g0537351 Helianthus annuus HOM05D003542 ORTHO05D004799 9.5e-79 298.1 179 75.4
Cre14.g629000 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.8e-77 293.9 292 49.0
Oeu033614.1 Olea europaea HOM05D003542 ORTHO05D004799 7.6e-76 288.5 224 62.9
PRCOL_00003662 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 5.4e-74 282.3 300 46.7
Cre07.g332500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 2.1e-70 270.4 297 46.8
Cpa.g.sc90.39 Carica papaya HOM05D003542 ORTHO05D004799 1.8e-61 240.7 122 89.3
PRCOL_00007053 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 2.4e-61 240.4 334 40.4
HanXRQChr17g0537331 Helianthus annuus HOM05D003542 ORTHO05D004799 1.3e-59 234.6 163 66.9
CSS0037399 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 2.9e-59 233.4 131 77.9
MCO04G331 Micromonas commoda HOM05D003542 ORTHO05D004799 8.4e-51 205.3 312 37.8
Os03g0586300 Oryza sativa ssp. japonica HOM05D003542 ORTHO05D004799 1.0e-48 198.4 122 69.7
Cre13.g568200 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 7.6e-44 182.2 319 33.2
Cpa.g.sc2620.1 Carica papaya HOM05D003542 ORTHO05D018761 7.1e-42 175.6 94 87.2
MBI06_g04285_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D018761 4.3e-39 166.4 201 45.8
PRCOL_00003997 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 1.1e-26 125.2 357 27.7
MCO09G799 Micromonas commoda HOM05D003542 ORTHO05D004799 5.5e-26 122.9 337 29.1
DCAR_000719 Daucus carota HOM05D000001 ORTHO05D000003 1.6e-25 121.3 89 65.2
PSO675G7261 Papaver somniferum HOM05D003542 ORTHO05D018761 2.7e-25 120.6 102 55.9
Cre07.g340950 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.4e-24 118.2 318 28.3
Cre01.g000400 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.0e-24 117.1 327 28.4
Cre04.g217949 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.0e-24 117.1 332 26.5
MCO03G075 Micromonas commoda HOM05D003542 ORTHO05D049253 3.0e-24 117.1 309 34.0
Cre01.g000450 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.7e-22 110.2 317 29.7
PRCOL_00002802 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 2.4e-21 107.5 260 29.6
Cre01.g000500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.1e-21 107.1 203 34.0
PRCOL_00005418 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 7.7e-20 102.4 300 28.0
MCO13G070 Micromonas commoda HOM05D003542 ORTHO05D004799 1.2e-17 95.1 208 34.1
Cpa.g.sc352.2 Carica papaya HOM05D003542 ORTHO05D018761 7.9e-17 92.4 70 67.1
CBR_g56719 Chara braunii HOM05D003542 ORTHO05D015060 1.8e-16 91.3 386 24.9
TAR374G0820 Trochodendron aralioides HOM05D003542 ORTHO05D018761 1.1e-15 88.6 97 46.4
CBR_g56721 Chara braunii HOM05D003542 ORTHO05D015060 2.6e-15 87.4 385 24.7
MCO14G411 Micromonas commoda HOM05D003542 ORTHO05D049034 1.3e-14 85.1 261 27.6
PRCOL_00004785 Prasinoderma coloniale HOM05D003542 ORTHO05D049253 2.2e-14 84.3 232 28.4
CBR_g50705 Chara braunii HOM05D003542 ORTHO05D004799 3.5e-12 77.0 149 31.5
AUR62032944 Chenopodium quinoa HOM05D003542 ORTHO05D000062 7.7e-12 75.9 49 65.3
CBR_g8752 Chara braunii HOM05D003542 ORTHO05D015060 6.7e-08 62.8 155 32.3
CBR_g11065 Chara braunii HOM05D003542 ORTHO05D004799 1.5e-07 61.6 174 29.9
CBR_g41334 Chara braunii HOM05D003542 ORTHO05D004799 3.3e-07 60.5 176 27.3
arahy.Tifrunner.gnm1.ann1.97RZQE Arachis hypogaea HOM05D002940 ORTHO05D003344 1.7e-06 58.2 32 75.0
arahy.Tifrunner.gnm1.ann1.41P0GI Arachis hypogaea HOM05D003542 ORTHO05D004799 2.2e-06 57.8 28 92.9
BraA03t15539Z Brassica rapa HOM05D029672 ORTHO05D028364 4.8e-06 56.6 27 96.3


User provided reference genes

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