Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 4.6e-91 337.8 162 100.0
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 4.6e-91 337.8 162 100.0
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 1.3e-90 336.3 162 99.4
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 3.1e-87 325.1 159 97.5
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 2.0e-86 322.4 157 98.1
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 2.6e-86 322.0 159 96.9
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 4.9e-85 317.8 159 95.0
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 2.1e-80 302.4 159 90.6
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 3.9e-74 281.6 159 85.5
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 8.7e-74 280.4 159 84.3
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 5.6e-73 277.7 159 84.3
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 1.9e-68 262.7 159 78.6
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 3.2e-68 261.9 154 81.8
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 3.2e-68 261.9 165 77.6
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 2.7e-67 258.8 159 78.0
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 3.1e-55 218.8 158 63.3
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 4.6e-51 204.9 156 60.3
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 8.7e-50 200.7 154 59.7
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 8.7e-50 200.7 154 59.1
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 1.9e-49 199.5 153 60.8
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 7.4e-49 197.6 140 64.3
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 9.7e-49 197.2 145 61.4
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 6.3e-48 194.5 139 64.0
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 8.2e-48 194.1 153 58.2
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 2.4e-47 192.6 154 60.4
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 5.3e-47 191.4 146 62.3
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 6.9e-47 191.0 155 58.7
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 6.9e-47 191.0 146 62.3
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 6.9e-47 191.0 152 57.9
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 1.5e-46 189.9 146 61.6
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 7.7e-46 187.6 152 54.6
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 1.0e-45 187.2 157 54.1
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 1.7e-45 186.4 156 55.1
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 3.8e-45 185.3 155 56.8
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 5.0e-45 184.9 111 76.6
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 6.5e-45 184.5 145 57.2
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 8.5e-45 184.1 156 54.5
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 1.4e-44 183.3 154 55.8
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 1.9e-44 183.0 151 55.0
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 3.2e-44 182.2 169 52.7
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 4.2e-44 181.8 160 53.1
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 5.5e-44 181.4 145 55.9
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 7.2e-44 181.0 155 56.1
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 1.2e-43 180.3 157 53.5
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 1.2e-43 180.3 156 54.5
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.2e-43 180.3 145 55.2
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 2.1e-43 179.5 129 65.1
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 2.7e-43 179.1 144 54.9
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 2.7e-43 179.1 154 53.9
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 2.7e-43 179.1 156 53.2
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 3.6e-43 178.7 143 60.8
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 3.6e-43 178.7 155 55.5
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 6.1e-43 177.9 138 57.2
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 6.1e-43 177.9 151 54.3
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 6.1e-43 177.9 142 57.0
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 7.9e-43 177.6 150 55.3
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 1.4e-42 176.8 153 54.9
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 2.3e-42 176.0 141 53.2
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 3.0e-42 175.6 144 56.9
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 6.7e-42 174.5 141 54.6
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 8.8e-42 174.1 155 54.2
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 1.5e-41 173.3 142 54.2
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 2.0e-41 172.9 138 58.0
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 4.3e-41 171.8 136 55.1
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 4.3e-41 171.8 136 55.1
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 5.7e-41 171.4 156 52.6
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 7.4e-41 171.0 131 58.8
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 1.7e-40 169.9 142 55.6
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 1.7e-40 169.9 150 52.7
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 2.2e-40 169.5 143 55.2
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 2.8e-40 169.1 143 52.4
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 2.8e-40 169.1 138 56.5
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 6.3e-40 167.9 143 54.5
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 4.1e-39 165.2 150 52.7
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 4.1e-39 165.2 143 54.5
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 9.1e-39 164.1 153 50.3
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 1.0e-37 160.6 136 52.9
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 1.7e-37 159.8 139 50.4
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 2.2e-37 159.5 129 57.4
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 2.9e-37 159.1 159 50.3
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 5.0e-37 158.3 139 51.1
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 5.0e-37 158.3 135 51.9
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 1.1e-36 157.1 113 64.6
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 2.5e-36 156.0 138 52.9
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 5.5e-36 154.8 137 51.1
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 7.2e-36 154.5 137 53.3
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 7.2e-36 154.5 152 48.7
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 1.6e-35 153.3 138 50.7
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 6.1e-35 151.4 142 48.6
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 1.4e-34 150.2 93 78.5
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 2.3e-34 149.4 138 52.9
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 5.1e-34 148.3 137 47.4
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 6.7e-34 147.9 137 47.4
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 9.7e-33 144.1 131 51.9
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 1.3e-32 143.7 151 49.7
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 2.2e-32 142.9 144 47.9
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 2.8e-32 142.5 138 47.8
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 1.0e-29 134.0 163 41.7
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 2.1e-27 126.3 104 55.8
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 3.6e-27 125.6 155 43.2
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 1.0e-26 124.0 146 44.5
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 4.0e-26 122.1 97 58.8
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 8.8e-26 120.9 132 42.4
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 1.1e-25 120.6 138 41.3
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 2.2e-24 116.3 160 37.5
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 2.8e-24 115.9 149 37.6
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 3.5e-22 109.0 197 32.5
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 4.7e-19 98.6 65 63.1
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.2e-17 94.0 62 61.3
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 2.0e-14 83.2 134 33.6
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 3.5e-14 82.4 64 56.2
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 1.3e-13 80.5 149 32.2
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 2.5e-12 76.3 112 36.6
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 5.2e-10 68.6 86 41.9
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 8.3e-08 61.2 143 30.8
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 9.2e-07 57.8 127 32.3
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 3.5e-06 55.8 38 60.5


User provided reference genes

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