Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 2.6e-135 485.3 234 100.0
C04p13080 Brassica napus HOM05D002759 ORTHO05D003290 2.6e-135 485.3 234 100.0
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 5.7e-135 484.2 234 99.6
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 1.4e-133 479.6 231 99.6
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 9.5e-122 440.3 240 91.2
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 1.3e-118 429.9 234 90.2
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 2.8e-113 412.1 230 87.4
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 3.1e-72 275.8 219 64.4
C04p13010 Brassica napus HOM05D002759 ORTHO05D003290 7.1e-61 238.0 118 96.6
C04p13060 Brassica napus HOM05D002759 ORTHO05D003290 7.1e-61 238.0 118 96.6
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 9.6e-58 227.6 292 45.5
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 6.9e-56 221.5 288 44.1
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.5e-55 220.3 285 46.0
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 2.0e-55 219.9 290 44.8
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 2.6e-55 219.5 290 44.1
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 2.6e-55 219.5 290 44.1
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 3.4e-55 219.2 285 44.9
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 4.5e-55 218.8 288 45.5
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 5.9e-55 218.4 289 44.3
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 1.3e-54 217.2 290 44.5
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 2.9e-54 216.1 291 43.0
CARHR230000 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.9e-54 216.1 289 44.3
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 3.8e-54 215.7 290 43.8
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 5.0e-54 215.3 287 45.3
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 5.0e-54 215.3 256 48.4
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 8.5e-54 214.5 260 48.1
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 3.6e-52 209.1 291 41.9
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 3.6e-52 209.1 291 41.9
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 4.6e-52 208.8 300 41.7
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 3.0e-51 206.1 289 42.9
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 3.0e-51 206.1 256 44.5
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 3.9e-51 205.7 283 42.4
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 6.7e-51 204.9 247 46.2
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 6.7e-51 204.9 247 46.2
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 6.7e-51 204.9 247 46.2
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 6.7e-51 204.9 282 41.8
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 8.7e-51 204.5 286 42.0
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 4.3e-50 202.2 286 42.3
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 4.3e-50 202.2 280 41.8
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 7.4e-50 201.4 281 41.6
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 1.3e-49 200.7 246 45.1
FvH4_5g29930 Fragaria vesca HOM05D002759 ORTHO05D003290 2.2e-49 199.9 248 45.6
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 2.2e-49 199.9 251 45.4
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 2.8e-49 199.5 277 41.9
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 3.7e-49 199.1 281 40.9
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 4.8e-49 198.7 277 41.5
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 4.8e-49 198.7 277 41.5
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 4.8e-49 198.7 281 40.9
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 1.4e-48 197.2 291 40.5
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 1.8e-48 196.8 280 40.7
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 2.4e-48 196.4 277 42.6
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 3.1e-48 196.1 279 40.1
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 3.1e-48 196.1 282 40.1
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 6.9e-48 194.9 279 40.1
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 6.9e-48 194.9 282 40.4
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 9.1e-48 194.5 281 42.0
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 9.1e-48 194.5 283 39.9
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 9.1e-48 194.5 281 39.9
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 1.2e-47 194.1 289 40.8
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.2e-47 194.1 277 42.2
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 1.5e-47 193.7 281 40.6
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 1.5e-47 193.7 289 40.8
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.0e-47 193.4 288 40.3
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.0e-47 193.4 288 40.3
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 2.0e-47 193.4 282 40.1
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 2.6e-47 193.0 284 41.9
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 3.4e-47 192.6 279 42.3
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 3.4e-47 192.6 286 41.3
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 4.5e-47 192.2 279 40.5
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 4.5e-47 192.2 281 40.9
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 5.9e-47 191.8 279 42.3
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.0e-46 191.0 278 40.6
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 1.0e-46 191.0 286 40.6
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 1.0e-46 191.0 278 41.0
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.3e-46 190.7 265 40.8
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 1.3e-46 190.7 286 40.6
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 1.3e-46 190.7 282 39.4
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.7e-46 190.3 282 39.7
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 3.8e-46 189.1 284 40.1
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 5.0e-46 188.7 295 38.6
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 5.0e-46 188.7 295 38.3
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 1.4e-45 187.2 280 39.6
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 2.5e-45 186.4 292 38.4
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 2.5e-45 186.4 282 39.0
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 3.2e-45 186.0 279 39.1
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 4.2e-45 185.7 281 39.1
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 9.4e-45 184.5 282 39.7
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.2e-44 184.1 281 39.1
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 1.2e-44 184.1 281 38.8
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 1.2e-44 184.1 281 38.8
FAN04G1156 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.6e-44 183.7 250 43.6
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 1.6e-44 183.7 283 37.8
Ah.07g205400 Amaranthus hybridus HOM05D002759 ORTHO05D003290 2.1e-44 183.3 280 38.9
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 2.7e-44 183.0 244 42.6
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 2.7e-44 183.0 281 37.7
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 3.6e-44 182.6 278 39.2
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 4.6e-44 182.2 277 38.6
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 6.1e-44 181.8 275 40.0
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 7.9e-44 181.4 282 38.7
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 1.0e-43 181.0 192 48.4
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.4e-43 180.6 286 39.5
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 8.8e-43 177.9 281 38.1
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 1.1e-42 177.6 281 37.7
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 2.0e-42 176.8 316 35.8
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 2.6e-42 176.4 193 48.2
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 4.4e-42 175.6 192 47.4
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 7.4e-42 174.9 278 37.1
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 7.4e-42 174.9 194 47.9
ATR0661G182 Amborella trichopoda HOM05D002759 ORTHO05D003290 2.2e-41 173.3 298 35.6
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 3.7e-41 172.6 275 37.5
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 3.7e-41 172.6 231 45.0
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 6.3e-41 171.8 280 38.2
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.4e-40 169.9 271 38.7
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 1.5e-39 167.2 191 46.6
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 2.0e-39 166.8 205 44.4
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis HOM05D002759 ORTHO05D003290 1.3e-38 164.1 250 40.8
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.7e-38 163.7 238 39.9
unitig_26.g9017 Utricularia gibba HOM05D002759 ORTHO05D003290 2.9e-38 162.9 161 50.9
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 9.4e-37 157.9 277 35.7
CARHR254490 Cardamine hirsuta HOM05D002759 ORTHO05D003290 3.9e-35 152.5 110 67.3
Atru.chr6.1022 Acer truncatum HOM05D002759 ORTHO05D003290 3.1e-32 142.9 279 36.6
Oeu037466.1 Olea europaea HOM05D002759 ORTHO05D003290 5.3e-32 142.1 171 46.8
SEGI_09006 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 7.0e-32 141.7 223 39.9
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.6e-31 140.6 175 42.9
SMO356G0583 Selaginella moellendorffii HOM05D002759 ORTHO05D003290 1.5e-29 134.0 285 30.5
vmacro01786 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 4.2e-29 132.5 170 41.8
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 1.6e-28 130.6 318 28.9
Cre01.g029200 Chlamydomonas reinhardtii HOM05D002759 ORTHO05D003290 4.7e-28 129.0 244 32.4
CBR_g18638 Chara braunii HOM05D002759 ORTHO05D003290 1.2e-26 124.4 351 27.9
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 1.7e-25 120.6 313 29.1
Aqoxy3G00697 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.8e-24 117.1 202 36.6
CARHR073260 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.9e-22 109.8 179 38.0
vmacro01782 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 2.9e-22 109.8 133 42.1
MD08G1226700 Malus domestica HOM05D002759 ORTHO05D003290 6.8e-19 98.6 253 31.2
Oeu043988.1 Olea europaea HOM05D002759 ORTHO05D003290 6.8e-19 98.6 177 33.3
Ca_21888_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.8e-17 93.2 171 33.9
RcHm_v2.0_Chr7g0223761 Rosa chinensis HOM05D002759 ORTHO05D003290 3.7e-17 92.8 201 31.3
Actinidia00221 Actinidia chinensis HOM05D002759 ORTHO05D003290 7.0e-16 88.6 154 37.7
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 3.5e-15 86.3 41 97.6
SEGI_36881 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 3.2e-13 79.7 84 47.6
SEGI_00066 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 1.2e-12 77.8 143 37.1
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 2.3e-11 73.6 106 37.7
SEGI_24894 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 6.8e-11 72.0 142 35.9
vmacro01784 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 6.8e-11 72.0 155 32.3
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 5.7e-10 68.9 76 47.4
vmacro01780 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 3.7e-09 66.2 81 40.7
CARHR254480 Cardamine hirsuta HOM05D002759 ORTHO05D003290 9.2e-08 61.6 30 93.3
COL.COLO4_38329 Corchorus olitorius HOM05D002759 ORTHO05D003290 9.2e-08 61.6 63 47.6
unitig_26.g9018 Utricularia gibba HOM05D002759 ORTHO05D003290 7.8e-07 58.5 51 54.9
COL.COLO4_16679 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.7e-06 57.4 107 35.5
RcHm_v2.0_Chr4g0428261 Rosa chinensis HOM05D002759 ORTHO05D003290 2.9e-06 56.6 104 36.5


User provided reference genes

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