Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 3.0e-54 214.9 107 100.0
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 3.0e-54 214.9 107 100.0
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 1.2e-52 209.5 107 99.1
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 6.2e-52 207.2 107 98.1
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 6.2e-52 207.2 107 98.1
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 4.4e-50 201.1 107 96.3
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 1.7e-49 199.1 107 95.3
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 1.4e-40 169.5 107 79.4
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 1.3e-38 162.9 107 77.6
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 2.4e-35 152.1 107 70.1
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 9.0e-35 150.2 107 69.2
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 2.0e-34 149.1 107 68.2
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 7.6e-34 147.1 109 72.5
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 1.3e-33 146.4 107 72.0
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 4.2e-32 141.4 107 70.1
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 4.2e-32 141.4 107 70.1
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 4.6e-31 137.9 107 67.3
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 4.6e-31 137.9 107 67.3
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 4.6e-31 137.9 107 67.3
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 2.2e-25 119.0 130 53.1
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 7.1e-24 114.0 109 61.5
BcaC02g11595 Brassica carinata HOM05D003251 ORTHO05D019972 2.8e-12 75.5 38 94.7
C04p13580 Brassica napus HOM05D000153 ORTHO05D000118 2.8e-12 75.5 38 94.7
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 3.7e-12 75.1 105 44.8
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 1.4e-11 73.2 114 40.4
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.8e-11 72.8 116 39.7
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 1.8e-11 72.8 117 40.2
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 3.1e-11 72.0 116 40.5
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 5.3e-11 71.2 104 40.4
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.2e-10 70.1 113 37.2
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 2.0e-10 69.3 102 41.2
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 2.0e-10 69.3 104 38.5
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.6e-10 68.9 110 40.9
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.6e-10 68.9 110 40.9
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 2.6e-10 68.9 113 44.2
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 4.5e-10 68.2 110 37.3
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 5.8e-10 67.8 127 39.4
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 5.8e-10 67.8 129 41.9
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.0e-09 67.0 113 38.9
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 1.3e-09 66.6 124 37.9
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 2.2e-09 65.9 103 38.8
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 2.9e-09 65.5 112 37.5
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 2.9e-09 65.5 114 37.7
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 3.8e-09 65.1 122 38.5
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 6.5e-09 64.3 121 36.4
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 8.4e-09 63.9 109 35.8
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 8.4e-09 63.9 124 37.1
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 8.4e-09 63.9 117 39.3
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 8.4e-09 63.9 117 39.3
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 1.1e-08 63.5 119 36.1
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 1.1e-08 63.5 99 37.4
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 1.4e-08 63.2 115 38.3
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 2.5e-08 62.4 100 38.0
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 3.2e-08 62.0 118 38.1
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 3.2e-08 62.0 109 35.8
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 3.2e-08 62.0 110 35.5
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 4.2e-08 61.6 103 38.8
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 4.2e-08 61.6 109 35.8
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 5.5e-08 61.2 134 36.6
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 5.5e-08 61.2 105 41.9
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 7.1e-08 60.8 96 38.5
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 9.3e-08 60.5 118 34.7
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 9.3e-08 60.5 109 34.9
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 9.3e-08 60.5 105 41.9
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 9.3e-08 60.5 112 36.6
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.2e-07 60.1 110 37.3
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.6e-07 59.7 70 47.1
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 2.1e-07 59.3 117 39.3
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.1e-07 59.3 70 47.1
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.1e-07 59.3 70 47.1
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 2.1e-07 59.3 103 36.9
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.7e-07 58.9 124 37.9
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 3.5e-07 58.5 107 39.3
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 4.6e-07 58.2 106 37.7
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 4.6e-07 58.2 112 34.8
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 6.0e-07 57.8 73 45.2
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 6.0e-07 57.8 106 37.7
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 6.0e-07 57.8 110 39.1
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 7.9e-07 57.4 107 33.6
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 1.0e-06 57.0 101 37.6
arahy.Tifrunner.gnm1.ann1.L0PZ9J Arachis hypogaea HOM05D006292 ORTHO05D006110 1.3e-06 56.6 96 39.6
arahy.Tifrunner.gnm1.ann1.RC41H8 Arachis hypogaea HOM05D006292 ORTHO05D006110 1.3e-06 56.6 96 39.6
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 1.3e-06 56.6 103 35.9
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.3e-06 55.8 120 35.8
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.3e-06 55.8 121 38.0
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 3.0e-06 55.5 132 37.1
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 3.9e-06 55.1 60 46.7
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 6.7e-06 54.3 64 50.0
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 6.7e-06 54.3 107 37.4
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 6.7e-06 54.3 92 37.0
Gohir.D03G171400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 8.7e-06 53.9 121 33.9
Gorai.003G182000 Gossypium raimondii HOM05D006292 ORTHO05D006110 8.7e-06 53.9 121 33.9
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 8.7e-06 53.9 62 43.5


User provided reference genes

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