Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 2.0e-189 665.6 333 100.0
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.9e-144 516.2 259 99.6
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 3.4e-133 478.8 252 95.6
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 9.9e-133 477.2 248 96.8
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 8.4e-132 474.2 248 96.0
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 2.1e-130 469.5 252 92.9
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 7.9e-130 467.6 247 93.9
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 1.0e-129 467.2 253 93.3
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 5.1e-129 464.9 253 92.5
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 5.1e-129 464.9 253 92.5
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 1.1e-128 463.8 249 92.8
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.5e-128 463.4 249 91.6
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 1.5e-128 463.4 253 92.9
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 1.9e-128 463.0 249 92.4
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 1.9e-128 463.0 248 91.9
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 2.4e-126 456.1 246 91.9
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 4.5e-125 451.8 276 85.5
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 2.2e-124 449.5 229 99.1
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 3.8e-124 448.7 249 90.0
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 1.9e-115 419.9 247 83.8
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 9.4e-115 417.5 248 83.1
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 2.1e-114 416.4 249 83.5
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 6.1e-114 414.8 235 90.6
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.4e-113 413.7 249 81.9
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 2.0e-112 409.8 249 80.7
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 2.5e-112 409.5 249 82.3
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 7.4e-112 407.9 249 81.9
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 7.4e-112 407.9 249 81.5
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 1.3e-111 407.1 247 81.8
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 1.3e-111 407.1 249 80.3
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 2.2e-111 406.4 275 75.3
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 2.8e-111 406.0 249 81.5
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 4.8e-111 405.2 249 80.7
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 6.3e-111 404.8 248 80.6
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 8.2e-111 404.4 248 81.5
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 1.1e-110 404.1 289 73.0
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 3.1e-110 402.5 247 79.8
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 3.1e-110 402.5 247 79.8
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 4.1e-110 402.1 249 80.3
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 6.9e-110 401.4 287 72.5
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 2.6e-109 399.4 275 74.5
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 5.9e-109 398.3 256 78.1
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 5.9e-109 398.3 289 72.0
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.0e-108 397.5 247 79.8
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.0e-108 397.5 249 79.1
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.2e-108 396.4 249 78.3
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 2.9e-108 396.0 249 79.5
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 3.8e-108 395.6 247 80.2
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 5.0e-108 395.2 247 78.5
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 1.1e-107 394.0 253 78.3
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 1.1e-107 394.0 275 74.2
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 1.1e-107 394.0 247 78.1
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 1.1e-107 394.0 267 74.9
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 1.4e-107 393.7 311 66.9
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.2e-107 392.5 247 78.5
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 3.2e-107 392.5 249 79.1
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 4.2e-107 392.1 252 77.4
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 4.2e-107 392.1 265 75.8
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 5.5e-107 391.7 247 78.1
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 7.2e-107 391.3 246 80.5
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 7.2e-107 391.3 273 73.3
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 7.2e-107 391.3 273 73.3
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 9.4e-107 391.0 249 76.7
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 1.6e-106 390.2 247 78.1
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.1e-106 389.8 281 71.9
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.1e-106 389.8 246 78.5
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.6e-106 389.0 283 71.0
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 3.6e-106 389.0 249 75.5
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.7e-106 388.7 283 71.4
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 7.9e-106 387.9 313 65.2
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 7.9e-106 387.9 249 75.9
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 7.9e-106 387.9 249 77.5
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 1.0e-105 387.5 249 77.9
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 1.0e-105 387.5 248 78.6
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 1.8e-105 386.7 246 78.9
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 1.8e-105 386.7 249 77.9
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 3.9e-105 385.6 249 76.3
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 6.7e-105 384.8 249 77.9
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 6.7e-105 384.8 249 77.9
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.1e-104 384.0 255 75.3
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 1.5e-104 383.6 246 76.4
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 4.4e-104 382.1 249 75.1
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 2.2e-103 379.8 249 77.1
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 2.2e-103 379.8 247 73.3
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.7e-103 379.0 249 75.9
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.8e-102 376.7 246 76.8
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 1.8e-102 376.7 249 74.3
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 1.8e-102 376.7 247 73.7
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.1e-102 375.9 249 75.5
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 3.1e-102 375.9 246 74.8
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 7.0e-102 374.8 255 73.3
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 7.0e-102 374.8 246 74.8
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.0e-100 368.6 271 68.3
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 6.5e-100 368.2 292 65.8
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.1e-99 367.5 234 76.5
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 1.9e-99 366.7 246 72.8
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.9e-99 366.7 248 71.0
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.9e-99 366.7 251 73.7
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 7.2e-99 364.8 227 77.1
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 1.2e-98 364.0 249 71.5
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 5.7e-96 355.1 248 73.0
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 7.7e-93 344.7 251 67.3
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.7e-92 343.6 303 60.1
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 6.1e-90 335.1 246 67.1
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 1.4e-89 334.0 253 65.6
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 2.6e-88 329.7 253 67.2
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.4e-88 329.3 247 69.6
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 4.8e-87 325.5 196 81.6
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 5.3e-86 322.0 250 66.0
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 9.1e-86 321.2 249 65.9
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 7.7e-85 318.2 249 63.1
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 7.7e-85 318.2 272 63.6
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 1.0e-81 307.8 194 77.3
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 1.5e-80 303.9 249 62.2
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 2.6e-80 303.1 192 79.2
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 3.1e-78 296.2 258 58.9
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 5.4e-78 295.4 175 82.3
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.2e-77 294.3 252 57.9
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 1.2e-74 284.3 177 78.5
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.6e-74 283.9 260 59.6
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.0e-73 281.2 241 61.4
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 5.2e-73 278.9 173 78.6
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 1.7e-71 273.9 230 65.7
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 9.2e-70 268.1 249 60.2
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 2.0e-69 266.9 168 83.9
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.5e-69 266.2 182 70.9
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.0e-68 262.3 182 70.3
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.4e-62 243.4 185 69.2
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 2.4e-62 243.4 175 70.3
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 2.8e-58 229.9 150 74.7
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.0e-56 223.8 139 77.7
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 1.5e-51 207.6 182 62.1
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.1e-49 201.4 251 43.4
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 5.2e-49 199.1 130 74.6
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 1.7e-47 194.1 147 66.7
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 2.9e-47 193.4 117 81.2
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 2.9e-47 193.4 117 81.2
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.1e-46 191.4 113 81.4
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 8.4e-39 165.2 97 83.5
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 1.3e-36 157.9 109 71.6
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 5.6e-35 152.5 143 55.2
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.4e-33 147.9 130 53.8
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.4e-32 142.9 113 62.8
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 3.2e-30 136.7 193 42.0
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.0e-28 131.7 89 70.8
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 3.3e-27 126.7 97 63.9
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 9.0e-25 118.6 271 33.6
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.0e-24 117.5 72 77.8
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 2.6e-24 117.1 74 79.7
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 8.4e-23 112.1 69 82.6
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 7.1e-22 109.0 86 65.1
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 2.7e-21 107.1 176 39.2
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.5e-19 101.3 68 73.5
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 1.6e-18 97.8 50 96.0
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.8e-17 94.4 65 63.1
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 6.9e-17 92.4 89 56.2
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 6.9e-17 92.4 89 56.2
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.8e-15 86.7 68 66.2
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 7.1e-14 82.4 46 84.8
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 4.8e-10 69.7 183 34.4
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.9e-06 57.8 34 67.6


User provided reference genes

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