Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p11650 Brassica napus HOM05D003485 ORTHO05D004004 1.8e-219 765.8 439 100.0
BolC4t22814H Brassica oleracea HOM05D003485 ORTHO05D004004 3.3e-216 755.0 440 94.8
BcaC02g11759 Brassica carinata HOM05D003485 ORTHO05D004004 1.0e-209 733.4 447 94.4
BraA05t19893Z Brassica rapa HOM05D003485 ORTHO05D004004 7.5e-205 717.2 441 94.3
A05p09350 Brassica napus HOM05D003485 ORTHO05D004004 1.1e-187 660.2 441 89.1
BcaB02g09354 Brassica carinata HOM05D003485 ORTHO05D004004 2.1e-183 646.0 439 84.7
Sp4g18720 Schrenkiella parvula HOM05D003485 ORTHO05D004004 6.2e-175 617.8 448 79.9
CARHR130720 Cardamine hirsuta HOM05D003485 ORTHO05D004004 2.1e-167 592.8 439 74.7
BcaB06g28940 Brassica carinata HOM05D003485 ORTHO05D004004 1.6e-159 566.6 441 73.2
AT2G36420 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 1.1e-158 563.9 437 75.7
BcaC02g07593 Brassica carinata HOM05D003485 ORTHO05D004004 1.8e-158 563.1 440 73.0
BolC4t28026H Brassica oleracea HOM05D003485 ORTHO05D004004 1.8e-158 563.1 440 73.0
Carub.0004s1823 Capsella rubella HOM05D003485 ORTHO05D004004 1.3e-156 557.0 457 72.4
AL4G32600 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 8.4e-156 554.3 443 72.7
BraA04t18284Z Brassica rapa HOM05D003485 ORTHO05D004004 1.9e-155 553.1 439 71.5
BcaB01g03837 Brassica carinata HOM05D003485 ORTHO05D004004 2.5e-152 542.7 440 70.0
C03p23590 Brassica napus HOM05D003485 ORTHO05D004004 6.7e-145 518.1 438 66.9
BolC3t14754H Brassica oleracea HOM05D003485 ORTHO05D004004 6.7e-145 518.1 438 66.9
A03p20140 Brassica napus HOM05D003485 ORTHO05D004004 7.4e-144 514.6 439 67.0
BcaC01g05657 Brassica carinata HOM05D003485 ORTHO05D004004 9.7e-144 514.2 438 66.9
BraA03t11264Z Brassica rapa HOM05D003485 ORTHO05D004004 1.4e-142 510.4 439 66.5
Aa31LG5G21610 Aethionema arabicum HOM05D003485 ORTHO05D004004 1.8e-81 307.4 440 52.7
THA.LOC104805079 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 1.5e-72 277.7 475 46.5
A04p27950 Brassica napus HOM05D003485 ORTHO05D004004 1.1e-65 255.0 188 73.4
THA.LOC104823464 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 2.3e-60 237.3 463 40.2
MD14G1017300 Malus domestica HOM05D003485 ORTHO05D004004 1.3e-55 221.5 528 38.8
Prupe.7G115800 Prunus persica HOM05D003485 ORTHO05D004004 3.0e-52 210.3 556 33.6
VMungo1383G1455 Vigna mungo HOM05D003485 ORTHO05D004004 3.9e-52 209.9 521 33.6
Ciclev10011456m.g Citrus clementina HOM05D003485 ORTHO05D004004 1.1e-51 208.4 552 33.0
MELO3C024521.2 Cucumis melo HOM05D003485 ORTHO05D004004 1.5e-51 208.0 523 34.6
Haze_19558 Corylus avellana HOM05D003485 ORTHO05D004004 1.9e-51 207.6 546 34.4
FvH4_6g18100 Fragaria vesca HOM05D003485 ORTHO05D004004 2.5e-51 207.2 529 32.3
AL6G13180 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 3.3e-51 206.8 526 35.6
CsaV3_6G040450 Cucumis sativus L. HOM05D003485 ORTHO05D004004 3.3e-51 206.8 512 35.0
RcHm_v2.0_Chr3g0472371 Rosa chinensis HOM05D003485 ORTHO05D004004 4.3e-51 206.5 544 32.2
AT5G03670 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 7.4e-51 205.7 526 36.7
A04p27940 Brassica napus HOM05D003485 ORTHO05D004004 7.4e-51 205.7 145 78.6
FAN14G1728 Fragaria x ananassa HOM05D003485 ORTHO05D004004 7.4e-51 205.7 529 32.1
BolC9t60060H Brassica oleracea HOM05D003485 ORTHO05D004004 2.8e-50 203.8 512 35.7
Cpa.g.sc5.65 Carica papaya HOM05D003485 ORTHO05D004004 6.2e-50 202.6 564 34.6
FAN05G0153 Fragaria x ananassa HOM05D003485 ORTHO05D004004 6.2e-50 202.6 542 32.8
FAN05G0444 Fragaria x ananassa HOM05D003485 ORTHO05D004004 6.2e-50 202.6 542 32.8
Sed0015592 Sechium edule HOM05D003485 ORTHO05D004004 6.2e-50 202.6 484 34.7
CiPaw.09G009600 Carya illinoinensis HOM05D003485 ORTHO05D004004 1.1e-49 201.8 559 32.6
ClCG04G009820 Citrullus lanatus HOM05D003485 ORTHO05D004004 1.1e-49 201.8 515 35.0
BcaB01g05809 Brassica carinata HOM05D003485 ORTHO05D004004 1.4e-49 201.4 520 35.0
TWI74G0849 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 1.4e-49 201.4 564 33.5
Duzib093G1418 Durio zibethinus HOM05D003485 ORTHO05D004004 1.8e-49 201.1 544 34.2
C09p73250 Brassica napus HOM05D003485 ORTHO05D004004 2.4e-49 200.7 508 35.8
QL07p040106 Quercus lobata HOM05D003485 ORTHO05D004004 5.3e-49 199.5 562 32.2
MD12G1019500 Malus domestica HOM05D003485 ORTHO05D004004 6.9e-49 199.1 528 35.4
Cfa016557 Carpinus fangiana HOM05D003485 ORTHO05D004004 1.2e-48 198.4 540 34.4
Manes.09G058764 Manihot esculenta HOM05D003485 ORTHO05D004004 2.0e-48 197.6 557 33.9
FAN02G1693 Fragaria x ananassa HOM05D003485 ORTHO05D004004 2.6e-48 197.2 530 34.3
Thhalv10016054m.g Eutrema salsugineum HOM05D003485 ORTHO05D004004 3.4e-48 196.8 520 36.0
FAN09G2203 Fragaria x ananassa HOM05D003485 ORTHO05D004004 5.8e-48 196.1 541 31.6
Thecc.05G083100 Theobroma cacao HOM05D003485 ORTHO05D004004 1.0e-47 195.3 543 35.2
BcaC06g32076 Brassica carinata HOM05D003485 ORTHO05D004004 3.8e-47 193.4 511 35.6
Sp6g39060 Schrenkiella parvula HOM05D003485 ORTHO05D004004 1.1e-46 191.8 535 35.1
A03p01320 Brassica napus HOM05D003485 ORTHO05D004004 2.5e-46 190.7 516 35.1
Gorai.006G157500 Gossypium raimondii HOM05D003485 ORTHO05D004004 2.5e-46 190.7 520 34.8
Sed0013820 Sechium edule HOM05D003485 ORTHO05D004004 2.5e-46 190.7 475 33.5
BraA03t09512Z Brassica rapa HOM05D003485 ORTHO05D004004 3.2e-46 190.3 517 35.2
BcaB01g05795 Brassica carinata HOM05D003485 ORTHO05D004004 4.2e-46 189.9 519 34.9
Phvul.001G187300 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 5.5e-46 189.5 523 31.0
C03p01670 Brassica napus HOM05D003485 ORTHO05D004004 7.1e-46 189.1 519 34.9
BolC3t12719H Brassica oleracea HOM05D003485 ORTHO05D004004 7.1e-46 189.1 519 34.9
Glyma.03G192000 Glycine max HOM05D003485 ORTHO05D004004 7.1e-46 189.1 528 31.4
Hma1.2p1_0084F.1_g043350 Hydrangea macrophylla HOM05D003485 ORTHO05D004004 7.1e-46 189.1 515 35.5
Gohir.A09G136100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 9.3e-46 188.7 519 34.1
Nitab4.5_0003454g0060 Nicotiana tabacum HOM05D003485 ORTHO05D004004 9.3e-46 188.7 491 35.0
Duzib106G1512 Durio zibethinus HOM05D003485 ORTHO05D004004 2.1e-45 187.6 539 34.5
CiPaw.10G006300 Carya illinoinensis HOM05D003485 ORTHO05D004004 2.7e-45 187.2 559 32.9
Gohir.D09G137200 Gossypium hirsutum HOM05D003485 ORTHO05D004004 4.6e-45 186.4 528 34.3
A10p32430 Brassica napus HOM05D003485 ORTHO05D004004 6.0e-45 186.0 512 34.6
BraA10t45283Z Brassica rapa HOM05D003485 ORTHO05D004004 6.0e-45 186.0 512 34.6
Gohir.A01G208100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 6.0e-45 186.0 519 36.2
PGSC0003DMG400002678 Solanum tuberosum HOM05D003485 ORTHO05D004004 1.0e-44 185.3 489 31.5
Gohir.D01G197500 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.3e-44 184.9 523 35.9
Solyc09g009220.4 Solanum lycopersicum HOM05D003485 ORTHO05D004004 1.3e-44 184.9 495 31.3
TWI77G0029 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 1.3e-44 184.9 524 33.6
MSTRG.5814 Avicennia marina HOM05D003485 ORTHO05D004004 2.3e-44 184.1 516 32.4
THA.LOC104816367 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 5.1e-44 183.0 533 34.0
Gorai.002G241600 Gossypium raimondii HOM05D003485 ORTHO05D004004 6.7e-44 182.6 525 35.8
Glyma.19G192500 Glycine max HOM05D003485 ORTHO05D004004 1.1e-43 181.8 540 31.1
TWI53G1381 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 1.9e-43 181.0 562 31.3
Duzib128G0159 Durio zibethinus HOM05D003485 ORTHO05D004004 3.3e-43 180.3 541 32.5
PGR142G1952 Punica granatum HOM05D003485 ORTHO05D004004 5.7e-43 179.5 522 32.4
SalBow3G3191 Salvia bowleyana HOM05D003485 ORTHO05D004004 5.7e-43 179.5 454 35.2
Potri.006G115300 Populus trichocarpa HOM05D003485 ORTHO05D004004 7.4e-43 179.1 561 34.9
Aa31LG1G21550 Aethionema arabicum HOM05D003485 ORTHO05D004004 9.6e-43 178.7 505 34.5
Nitab4.5_0000132g0120 Nicotiana tabacum HOM05D003485 ORTHO05D004004 9.6e-43 178.7 449 34.1
Lsat_1_v5_gn_2_20881 Lactuca sativa HOM05D003485 ORTHO05D004004 1.3e-42 178.3 507 33.1
Sabra06G0090200 Salix brachista HOM05D003485 ORTHO05D004004 3.7e-42 176.8 554 31.8
Atru.chr8.1615 Acer truncatum HOM05D003485 ORTHO05D004004 8.2e-42 175.6 555 34.6
PGSC0003DMG400028260 Solanum tuberosum HOM05D003485 ORTHO05D004004 1.1e-41 175.3 448 35.3
Oeu040530.1 Olea europaea HOM05D003485 ORTHO05D004004 1.4e-41 174.9 505 34.3
TPR.G5671 Trifolium pratense HOM05D003485 ORTHO05D004004 1.4e-41 174.9 540 30.4
Medtr1g060890 Medicago truncatula HOM05D003485 ORTHO05D004004 1.8e-41 174.5 532 31.2
Manes.08G022100 Manihot esculenta HOM05D003485 ORTHO05D004004 2.4e-41 174.1 542 33.2
GSVIVG01033797001 Vitis vinifera HOM05D003485 ORTHO05D004004 3.1e-41 173.7 487 34.7
Peaxi162Scf00068g00085 Petunia axillaris HOM05D003485 ORTHO05D004004 4.1e-41 173.3 510 31.6
ClCG10G019240 Citrullus lanatus HOM05D003485 ORTHO05D004004 9.0e-41 172.2 480 33.5
Lj5g0007324 Lotus japonicus HOM05D003485 ORTHO05D004004 1.2e-40 171.8 525 31.6
Lj1g0007531 Lotus japonicus HOM05D003485 ORTHO05D004004 3.4e-40 170.2 534 31.3
Oeu032419.1 Olea europaea HOM05D003485 ORTHO05D004004 3.4e-40 170.2 497 32.4
MSTRG.26648 Avicennia marina HOM05D003485 ORTHO05D004004 5.8e-40 169.5 497 31.4
THA.LOC104826931 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 5.8e-40 169.5 540 32.8
Nitab4.5_0004489g0010 Nicotiana tabacum HOM05D003485 ORTHO05D004004 1.7e-39 167.9 491 34.4
Lsat_1_v5_gn_1_48761 Lactuca sativa HOM05D003485 ORTHO05D004004 2.9e-39 167.2 512 31.1
TAR623G1754 Trochodendron aralioides HOM05D003485 ORTHO05D004004 6.5e-39 166.0 529 34.8
CsaV3_3G036950 Cucumis sativus L. HOM05D003485 ORTHO05D004004 8.4e-39 165.6 481 34.7
TAR369G0025 Trochodendron aralioides HOM05D003485 ORTHO05D004004 8.4e-39 165.6 526 32.5
MSTRG.10354 Avicennia marina HOM05D003485 ORTHO05D004004 1.1e-38 165.2 477 31.9
arahy.Tifrunner.gnm1.ann1.FM4PU3 Arachis hypogaea HOM05D003485 ORTHO05D004004 5.5e-38 162.9 495 30.9
PGR004G2186 Punica granatum HOM05D003485 ORTHO05D004004 7.2e-38 162.5 493 33.9
HanXRQChr01g0028981 Helianthus annuus HOM05D003485 ORTHO05D004004 1.2e-37 161.8 493 31.6
Sed0026564 Sechium edule HOM05D003485 ORTHO05D004004 2.7e-37 160.6 462 30.7
Sopen10g033000 Solanum pennellii HOM05D003485 ORTHO05D004004 1.0e-36 158.7 437 34.3
Actinidia10397 Actinidia chinensis HOM05D003485 ORTHO05D004004 1.3e-36 158.3 513 34.1
Phvul.007G222400 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 1.8e-36 157.9 495 29.5
Lalb_Chr20g0112141 Lupinus albus HOM05D003485 ORTHO05D004004 3.9e-36 156.8 517 33.7
VMungo0720G2646 Vigna mungo HOM05D003485 ORTHO05D004004 1.5e-35 154.8 486 30.7
CSS0002533 Camellia sinensis var. sinensis HOM05D003485 ORTHO05D004004 2.5e-35 154.1 522 30.7
Glyma.10G067100 Glycine max HOM05D003485 ORTHO05D004004 2.5e-35 154.1 519 31.6
Glyma.13G152100 Glycine max HOM05D003485 ORTHO05D004004 2.5e-35 154.1 522 29.9
Solyc10g083530.2 Solanum lycopersicum HOM05D003485 ORTHO05D004004 2.8e-34 150.6 442 33.7
DCAR_013367 Daucus carota HOM05D003485 ORTHO05D004004 4.8e-34 149.8 489 30.5
Lalb_Chr01g0018291 Lupinus albus HOM05D003485 ORTHO05D004004 6.3e-34 149.4 522 30.8
arahy.Tifrunner.gnm1.ann1.UZ5M1P Arachis hypogaea HOM05D003485 ORTHO05D004004 8.2e-34 149.1 495 30.3
CARHR209630 Cardamine hirsuta HOM05D003485 ORTHO05D004004 1.4e-33 148.3 367 38.4
COL.COLO4_29799 Corchorus olitorius HOM05D003485 ORTHO05D004004 1.4e-33 148.3 473 31.5
Cc06_g05360 Coffea canephora HOM05D003485 ORTHO05D004004 5.3e-33 146.4 559 31.8
CAN.G824.15 Capsicum annuum HOM05D003485 ORTHO05D004004 1.5e-32 144.8 512 31.6
Eucgr.K02068 Eucalyptus grandis HOM05D003485 ORTHO05D004004 3.4e-32 143.7 474 36.5
PSO339G0389 Papaver somniferum HOM05D003485 ORTHO05D004004 3.4e-32 143.7 565 28.5
PSO384G0133 Papaver somniferum HOM05D003485 ORTHO05D004004 5.9e-32 142.9 567 28.2
Oeu040808.2 Olea europaea HOM05D003485 ORTHO05D004004 7.7e-32 142.5 487 31.6
EL10Ac7g16972 Beta vulgaris HOM05D003485 ORTHO05D004004 1.0e-31 142.1 527 29.0
Ah.08g210850 Amaranthus hybridus HOM05D003485 ORTHO05D004004 2.2e-31 141.0 536 28.4
arahy.Tifrunner.gnm1.ann1.LG3GGS Arachis hypogaea HOM05D003485 ORTHO05D004004 6.5e-31 139.4 521 31.9
arahy.Tifrunner.gnm1.ann1.W633S9 Arachis hypogaea HOM05D003485 ORTHO05D004004 6.5e-31 139.4 521 31.9
Lalb_Chr02g0155221 Lupinus albus HOM05D003485 ORTHO05D004004 6.5e-31 139.4 534 29.0
Sed0007624 Sechium edule HOM05D003485 ORTHO05D004004 6.5e-31 139.4 434 31.1
Aqoxy2G01359 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 1.1e-30 138.7 565 27.6
Eucgr.A01536 Eucalyptus grandis HOM05D003485 ORTHO05D004004 4.2e-30 136.7 508 30.3
Nn2g14048 Nelumbo nucifera HOM05D003485 ORTHO05D004004 1.4e-28 131.7 334 34.7
Psat6g080680 Pisum sativum HOM05D003485 ORTHO05D004004 1.4e-28 131.7 353 34.0
Sc02g0001100 Simmondsia chinensis HOM05D003485 ORTHO05D004004 1.8e-28 131.3 539 26.9
HanXRQChr11g0351281 Helianthus annuus HOM05D003485 ORTHO05D004004 2.3e-28 131.0 491 29.3
vmacro07380 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 8.8e-28 129.0 345 34.2
Gohir.D01G128400 Gossypium hirsutum HOM05D003485 ORTHO05D004004 7.4e-27 125.9 497 29.0
Aqoxy4G02862 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 2.2e-26 124.4 520 30.2
Actinidia08428 Actinidia chinensis HOM05D003485 ORTHO05D004004 1.8e-25 121.3 459 29.8
Gorai.002G159100 Gossypium raimondii HOM05D003485 ORTHO05D004004 1.8e-25 121.3 493 29.2
Rhsim04G0135000 Rhododendron simsii HOM05D003485 ORTHO05D004004 3.1e-25 120.6 467 29.1
DCAR_020774 Daucus carota HOM05D003485 ORTHO05D004004 5.3e-25 119.8 522 30.7
Rhsim03G0079600 Rhododendron simsii HOM05D003485 ORTHO05D004004 9.1e-25 119.0 493 30.8
Dinv19839 Davidia involucrata HOM05D003485 ORTHO05D004004 1.5e-24 118.2 328 32.3
Lj2A130G48 Lonicera japonica HOM05D003485 ORTHO05D004004 1.5e-24 118.2 354 33.1
Gohir.A01G138700 Gossypium hirsutum HOM05D003485 ORTHO05D004004 2.0e-24 117.9 453 28.3
Nn6g35018 Nelumbo nucifera HOM05D003485 ORTHO05D004004 5.9e-24 116.3 299 35.8
SGA_v2.0_scaffold184G39942 Striga asiatica HOM05D003485 ORTHO05D004004 1.7e-23 114.8 362 32.3
Sopen09g003950 Solanum pennellii HOM05D003485 ORTHO05D004004 2.9e-23 114.0 384 30.7
TPR.G25373 Trifolium pratense HOM05D003485 ORTHO05D004004 1.4e-22 111.7 286 34.6
Psat3g035000 Pisum sativum HOM05D003485 ORTHO05D004004 9.4e-22 109.0 282 35.1
Migut.L01764 Erythranthe guttata HOM05D003485 ORTHO05D004004 4.7e-21 106.7 441 28.8
MBI17_g01908_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 1.8e-20 104.8 526 28.7
Carub.0006s0258 Capsella rubella HOM05D003485 ORTHO05D004004 3.0e-20 104.0 274 40.1
ECA248G2160 Erigeron canadensis HOM05D003485 ORTHO05D004004 5.1e-20 103.2 376 29.0
Migut.J00977 Erythranthe guttata HOM05D003485 ORTHO05D004004 8.8e-20 102.4 306 31.4
SalBow5G3755 Salvia bowleyana HOM05D003485 ORTHO05D004004 1.7e-18 98.2 442 28.3
Dinv21244 Davidia involucrata HOM05D003485 ORTHO05D004004 1.2e-16 92.0 285 42.5
ECA238G4534 Erigeron canadensis HOM05D003485 ORTHO05D004004 2.0e-16 91.3 260 31.9
MBI01_g46563_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 4.5e-16 90.1 287 30.3
Actinidia31285 Actinidia chinensis HOM05D003485 ORTHO05D004004 2.2e-15 87.8 331 29.3
Ca_08971_v3 Cicer arietinum L. HOM05D003485 ORTHO05D004004 5.0e-15 86.7 314 31.2
SGA_v2.0_scaffold40G15384 Striga asiatica HOM05D003485 ORTHO05D004004 1.9e-14 84.7 207 30.9
MBI01_g18815_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 2.5e-14 84.3 312 31.4
AUR62043111 Chenopodium quinoa HOM05D003485 ORTHO05D004004 8.0e-13 79.3 214 29.0
unitig_578.g15766 Utricularia gibba HOM05D003485 ORTHO05D004004 1.4e-12 78.6 333 27.0
HanXRQChr11g0351271 Helianthus annuus HOM05D003485 ORTHO05D004004 6.7e-12 76.3 235 30.6
MELO3C000161.2 Cucumis melo HOM05D003485 ORTHO05D004004 8.8e-12 75.9 215 36.3
unitig_26.g9244 Utricularia gibba HOM05D003485 ORTHO05D004004 8.8e-12 75.9 324 29.0
DCAR_007743 Daucus carota HOM05D003485 ORTHO05D004004 1.0e-07 62.4 445 22.5
vmacro08822 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 2.2e-07 61.2 326 25.5
CDE11G0380 Ceratophyllum demersum HOM05D055600 ORTHO05D003225 4.2e-06 57.0 213 25.4


User provided reference genes

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