Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p11090 Brassica napus HOM05D007534 ORTHO05D009540 1.6e-135 486.1 252 100.0
BolC4t22757H Brassica oleracea HOM05D007534 ORTHO05D009540 1.6e-127 459.5 252 95.6
BcaC02g11812 Brassica carinata HOM05D007534 ORTHO05D009540 1.7e-124 449.5 255 93.3
BraA05t19860Z Brassica rapa HOM05D007534 ORTHO05D009540 4.0e-118 428.3 253 91.3
BcaB02g09324 Brassica carinata HOM05D007534 ORTHO05D009540 4.4e-117 424.9 255 89.4
A05p08980 Brassica napus HOM05D007534 ORTHO05D009540 4.7e-111 404.8 253 87.4
AL4G33100 Arabidopsis lyrata HOM05D007534 ORTHO05D009540 6.0e-106 387.9 258 81.0
CARHR131340 Cardamine hirsuta HOM05D007534 ORTHO05D009540 1.1e-104 383.6 255 80.8
AT2G36885 Arabidopsis thaliana HOM05D007534 ORTHO05D009540 6.9e-102 374.4 258 78.7
Carub.0004s1873 Capsella rubella HOM05D007534 ORTHO05D009540 2.6e-101 372.5 256 79.3
Sp4g19170 Schrenkiella parvula HOM05D007534 ORTHO05D009540 4.9e-92 341.7 257 75.1
THA.LOC104807064 Tarenaya hassleriana HOM05D007534 ORTHO05D009540 3.5e-90 335.5 260 70.8
TAR369G0058 Trochodendron aralioides HOM05D007534 ORTHO05D009540 1.3e-87 327.0 251 69.3
Thhalv10017130m.g Eutrema salsugineum HOM05D007534 ORTHO05D009540 1.6e-87 326.6 258 72.9
Gohir.D01G204300 Gossypium hirsutum HOM05D007534 ORTHO05D009540 8.2e-87 324.3 249 68.3
Gorai.002G246500 Gossypium raimondii HOM05D007534 ORTHO05D009540 2.0e-85 319.7 250 68.0
vmacro08785 Vaccinium macrocarpon HOM05D007534 ORTHO05D009540 2.6e-85 319.3 261 67.4
Atru.chr8.1788 Acer truncatum HOM05D007534 ORTHO05D009540 1.0e-84 317.4 269 65.4
Manes.09G065300 Manihot esculenta HOM05D007534 ORTHO05D009540 1.3e-84 317.0 264 66.7
Thecc.05G068400 Theobroma cacao HOM05D007534 ORTHO05D009540 1.7e-84 316.6 255 67.5
MELO3C024472.2 Cucumis melo HOM05D007534 ORTHO05D009540 2.2e-84 316.2 261 66.7
Gohir.A01G213100 Gossypium hirsutum HOM05D007534 ORTHO05D009540 2.9e-84 315.8 249 67.1
GSVIVG01033650001 Vitis vinifera HOM05D007534 ORTHO05D009540 2.9e-84 315.8 181 84.0
CANSAT80G0853 Cannabis sativa HOM05D007534 ORTHO05D009540 3.8e-84 315.5 220 72.7
CsaV3_6G039950 Cucumis sativus L. HOM05D007534 ORTHO05D009540 4.9e-84 315.1 262 67.2
Cpa.g.sc102.24 Carica papaya HOM05D007534 ORTHO05D009540 6.5e-84 314.7 270 65.6
CAN.G900.25 Capsicum annuum HOM05D007534 ORTHO05D009540 1.1e-83 313.9 223 72.6
ClCG04G009370 Citrullus lanatus HOM05D007534 ORTHO05D009540 1.9e-83 313.2 258 65.5
Duzib093G0985 Durio zibethinus HOM05D007534 ORTHO05D009540 4.2e-83 312.0 254 67.3
Eucgr.A01668 Eucalyptus grandis HOM05D007534 ORTHO05D009540 4.2e-83 312.0 255 66.7
Nn2g13809 Nelumbo nucifera HOM05D007534 ORTHO05D009540 7.1e-83 311.2 258 66.3
Lj2A120T45 Lonicera japonica HOM05D007534 ORTHO05D009540 9.3e-83 310.8 197 79.7
Sabra16G0099100 Salix brachista HOM05D007534 ORTHO05D009540 9.3e-83 310.8 254 65.4
Oeu005026.1 Olea europaea HOM05D007534 ORTHO05D009540 1.2e-82 310.5 280 62.9
AUR62042063 Chenopodium quinoa HOM05D007534 ORTHO05D009540 2.1e-82 309.7 220 72.7
MSTRG.19184 Avicennia marina HOM05D007534 ORTHO05D009540 2.7e-82 309.3 264 66.7
Sed0017969 Sechium edule HOM05D007534 ORTHO05D009540 3.5e-82 308.9 245 67.3
Aqoxy1G01139 Aquilegia oxysepala HOM05D007534 ORTHO05D009540 4.6e-82 308.5 178 83.1
arahy.Tifrunner.gnm1.ann1.39JB5J Arachis hypogaea HOM05D007534 ORTHO05D009540 6.0e-82 308.1 248 65.7
arahy.Tifrunner.gnm1.ann1.C885SU Arachis hypogaea HOM05D007534 ORTHO05D009540 6.0e-82 308.1 248 65.7
TWI53G0173 Tripterygium wilfordii HOM05D007534 ORTHO05D009540 6.0e-82 308.1 262 66.4
Solyc09g008270.3 Solanum lycopersicum HOM05D007534 ORTHO05D009540 1.3e-81 307.0 241 67.6
Sopen09g003090 Solanum pennellii HOM05D007534 ORTHO05D009540 1.3e-81 307.0 180 81.7
Dinv37321 Davidia involucrata HOM05D001037 ORTHO05D000888 2.3e-81 306.2 243 65.8
HanXRQChr13g0400981 Helianthus annuus HOM05D007534 ORTHO05D009540 5.1e-81 305.1 250 66.4
COL.COLO4_26947 Corchorus olitorius HOM05D007534 ORTHO05D009540 6.7e-81 304.7 263 65.0
Potri.016G098900 Populus trichocarpa HOM05D007534 ORTHO05D009540 6.7e-81 304.7 230 69.6
SalBow3G3627 Salvia bowleyana HOM05D007534 ORTHO05D009540 1.5e-80 303.5 258 66.7
Prupe.7G128600 Prunus persica HOM05D007534 ORTHO05D009540 1.9e-80 303.1 263 64.3
Migut.J00648 Erythranthe guttata HOM05D007534 ORTHO05D009540 2.5e-80 302.8 254 66.1
PGSC0003DMG400003865 Solanum tuberosum HOM05D007534 ORTHO05D009540 2.5e-80 302.8 255 63.1
Aa31LG5G22110 Aethionema arabicum HOM05D007534 ORTHO05D009540 3.3e-80 302.4 252 67.5
CiPaw.10G129000 Carya illinoinensis HOM05D007534 ORTHO05D009540 3.3e-80 302.4 182 79.7
QL07p043071 Quercus lobata HOM05D007534 ORTHO05D009540 3.3e-80 302.4 253 62.1
Sc20g0005570 Simmondsia chinensis HOM05D007534 ORTHO05D009540 5.7e-80 301.6 217 70.0
SGA_v2.0_scaffold75G24837 Striga asiatica HOM05D007534 ORTHO05D009540 4.8e-79 298.5 253 64.0
Psat6g074600 Pisum sativum HOM05D007534 ORTHO05D009540 1.4e-78 297.0 220 69.1
Lsat_1_v5_gn_6_24941 Lactuca sativa HOM05D007534 ORTHO05D009540 1.8e-78 296.6 254 63.8
Lj5g0014413 Lotus japonicus HOM05D007534 ORTHO05D009540 1.8e-78 296.6 215 71.2
Medtr1g063070 Medicago truncatula HOM05D007534 ORTHO05D009540 3.1e-78 295.8 254 64.2
Ca_28252_v3 Cicer arietinum L. HOM05D007534 ORTHO05D009540 6.9e-78 294.7 177 82.5
Lalb_Chr06g0171761 Lupinus albus HOM05D007534 ORTHO05D009540 1.2e-77 293.9 248 65.7
RcHm_v2.0_Chr3g0470401 Rosa chinensis HOM05D007534 ORTHO05D009540 3.4e-77 292.4 262 62.6
ECA233G2496 Erigeron canadensis HOM05D007534 ORTHO05D009540 1.3e-76 290.4 178 79.2
Glyma.13G141700 Glycine max HOM05D007534 ORTHO05D009540 1.3e-76 290.4 232 67.7
Phvul.007G147900 Phaseolus vulgaris HOM05D007534 ORTHO05D009540 2.9e-76 289.3 221 68.8
Haze_20525 Corylus avellana HOM05D007534 ORTHO05D009540 8.5e-76 287.7 270 58.9
Os03g0137600 Oryza sativa ssp. japonica HOM05D007534 ORTHO05D009540 1.1e-75 287.3 182 76.4
Rhsim04G0144000 Rhododendron simsii HOM05D007534 ORTHO05D009540 5.5e-75 285.0 278 59.7
Ciclev10012507m.g Citrus clementina HOM05D007534 ORTHO05D009540 2.7e-74 282.7 189 74.6
Nitab4.5_0000578g0110 Nicotiana tabacum HOM05D007534 ORTHO05D009540 4.6e-74 282.0 249 63.9
PSO266G0073 Papaver somniferum HOM05D007534 ORTHO05D009540 4.6e-74 282.0 214 65.9
Zm00001eb003080 Zea mays HOM05D007534 ORTHO05D009540 1.1e-72 277.3 237 63.7
CDE09G0108 Ceratophyllum demersum HOM05D007534 ORTHO05D009540 5.7e-72 275.0 182 72.0
Cfa017628 Carpinus fangiana HOM05D007534 ORTHO05D009540 4.8e-71 271.9 258 60.1
MD12G1110000 Malus domestica HOM05D007534 ORTHO05D009540 4.8e-71 271.9 272 58.8
Cc06_g04320 Coffea canephora HOM05D007534 ORTHO05D009540 2.4e-70 269.6 264 60.6
Actinidia32489 Actinidia chinensis HOM05D007534 ORTHO05D009540 2.0e-69 266.5 153 83.0
ATR0723G005 Amborella trichopoda HOM05D007534 ORTHO05D009540 2.0e-69 266.5 253 57.3
Hma1.2p1_0205F.1_g086900 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 1.9e-67 260.0 223 64.6
Peaxi162Scf00847g00032 Petunia axillaris HOM05D007534 ORTHO05D009540 1.8e-65 253.4 210 63.8
Nitab4.5_0008624g0030 Nicotiana tabacum HOM05D007534 ORTHO05D009540 2.3e-65 253.1 249 57.4
Pp3c2_17450 Physcomitrium patens HOM05D007534 ORTHO05D009540 5.1e-65 251.9 180 68.3
Mapoly0049s0045 Marchantia polymorpha HOM05D007534 ORTHO05D009540 1.5e-64 250.4 231 57.6
AagrBONN_evm.TU.Sc2ySwM_117.1862 Anthoceros agrestis HOM05D007534 ORTHO05D009540 4.4e-64 248.8 214 61.7
Ah.15g092560 Amaranthus hybridus HOM05D007534 ORTHO05D009540 8.2e-63 244.6 266 54.1
EL10Ac7g16645 Beta vulgaris HOM05D007534 ORTHO05D009540 4.5e-61 238.8 216 60.2
CSS0046236 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D009540 3.0e-57 226.1 205 61.5
Hma1.2p1_0828F.1_g225100 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 2.6e-56 223.0 132 81.8
TPR.G11259 Trifolium pratense HOM05D007534 ORTHO05D009540 1.7e-55 220.3 123 87.0
PGR004G0787 Punica granatum HOM05D007534 ORTHO05D009540 8.2e-55 218.0 194 62.9
unitig_22.g5100 Utricularia gibba HOM05D007534 ORTHO05D009540 2.0e-48 196.8 123 74.8
Cre02.g143450 Chlamydomonas reinhardtii HOM05D007534 ORTHO05D009540 6.5e-44 181.8 180 53.9
QL03p002371 Quercus lobata HOM05D007534 ORTHO05D009540 8.5e-44 181.4 154 61.7
AUR62026915 Chenopodium quinoa HOM05D007534 ORTHO05D009540 1.5e-43 180.6 137 67.2
FAN15G1333 Fragaria x ananassa HOM05D007534 ORTHO05D009540 2.6e-40 169.9 94 83.0
MD04G1092000 Malus domestica HOM05D007534 ORTHO05D009540 2.0e-32 143.7 129 60.5
CSS0001990 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D012079 1.7e-28 130.6 75 82.7
ATR0680G419 Amborella trichopoda HOM05D007534 ORTHO05D009540 1.2e-26 124.4 65 89.2
Rhsim04G0142700 Rhododendron simsii HOM05D007534 ORTHO05D009540 1.2e-18 97.8 56 85.7
MD04G1092200 Malus domestica HOM05D007534 ORTHO05D009540 3.3e-11 73.2 96 46.9


User provided reference genes

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