Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 2.1e-118 429.1 227 100.0
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 2.1e-118 429.1 227 100.0
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 6.8e-117 424.1 227 98.2
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.6e-116 422.2 227 97.8
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 3.9e-112 408.3 228 95.2
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 4.7e-110 401.4 227 93.4
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 7.6e-108 394.0 227 90.7
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.3e-104 383.3 227 89.0
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.1e-103 380.2 227 89.4
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.3e-103 378.6 227 88.1
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 7.3e-103 377.5 227 88.1
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 7.3e-103 377.5 227 88.5
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 8.1e-102 374.0 227 87.7
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 5.2e-101 371.3 227 86.3
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 4.4e-100 368.2 227 85.5
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 6.4e-99 364.4 231 83.1
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 6.0e-97 357.8 227 84.1
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 7.6e-92 340.9 230 78.3
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 9.9e-84 313.9 221 72.4
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 9.9e-84 313.9 221 72.4
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 1.3e-83 313.5 221 71.9
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.4e-82 310.1 223 70.0
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 1.4e-82 310.1 224 69.6
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 7.1e-82 307.8 223 69.1
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.2e-81 307.0 225 68.9
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 2.1e-81 306.2 163 96.9
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 2.7e-81 305.8 226 68.6
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 6.0e-81 304.7 223 69.1
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 3.0e-80 302.4 226 68.1
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 4.3e-79 298.5 227 67.8
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 5.6e-79 298.1 223 67.3
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 9.6e-79 297.4 227 66.1
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 4.8e-78 295.0 232 64.7
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 4.8e-78 295.0 220 65.9
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 8.1e-78 294.3 228 65.8
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 8.1e-78 294.3 225 65.8
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.1e-77 293.9 230 65.7
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.4e-77 293.5 219 67.1
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.8e-77 293.1 226 65.9
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.8e-77 293.1 221 64.3
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 3.1e-77 292.4 221 67.0
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.5e-76 290.0 220 66.4
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 3.4e-76 288.9 219 63.5
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 4.5e-76 288.5 227 65.2
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.6e-76 287.7 219 63.0
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.0e-75 287.3 221 63.3
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 1.3e-75 287.0 223 64.1
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 4.9e-75 285.0 224 63.4
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.9e-74 283.1 232 62.1
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.9e-74 283.1 230 62.6
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 3.2e-74 282.3 220 65.9
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 7.1e-74 281.2 225 64.4
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 9.3e-74 280.8 225 61.3
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 9.3e-74 280.8 220 64.5
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.2e-73 280.4 224 63.4
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.6e-73 280.0 220 63.6
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.1e-73 279.6 224 62.9
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.1e-73 279.6 239 59.8
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.7e-73 279.3 228 62.3
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.7e-73 279.3 228 61.0
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 2.7e-73 279.3 222 62.2
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 4.6e-73 278.5 228 62.7
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 6.0e-73 278.1 216 63.4
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.0e-72 277.3 232 62.9
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 1.3e-72 276.9 222 60.4
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.1e-72 275.0 238 59.2
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 2.5e-71 272.7 238 59.2
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 7.4e-71 271.2 222 59.9
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 7.4e-71 271.2 221 61.5
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.3e-70 270.4 236 58.5
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.3e-70 270.4 210 63.3
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.6e-70 270.0 220 59.5
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.6e-70 270.0 220 60.0
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.6e-70 270.0 238 58.8
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 2.1e-70 269.6 234 61.5
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.7e-70 268.9 221 63.8
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.8e-70 268.5 231 59.3
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 2.4e-69 266.2 221 60.6
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 9.0e-69 264.2 229 60.7
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.2e-68 263.8 221 60.2
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.6e-68 262.7 221 60.2
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 2.6e-68 262.7 224 60.7
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 2.6e-68 262.7 221 62.0
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 3.4e-68 262.3 228 59.2
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 3.4e-68 262.3 224 59.4
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.5e-68 261.9 227 59.0
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.8e-67 258.8 229 60.3
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 3.8e-67 258.8 221 60.2
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 6.5e-67 258.1 218 59.6
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 8.4e-67 257.7 222 61.7
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 3.2e-66 255.8 221 59.7
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 5.5e-66 255.0 218 59.6
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 4.6e-65 251.9 224 58.0
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 4.6e-65 251.9 215 59.5
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 6.1e-65 251.5 186 64.5
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 7.9e-65 251.1 222 59.5
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.0e-64 250.8 222 59.5
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.8e-64 250.0 219 60.3
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 3.9e-64 248.8 218 56.0
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 3.9e-64 248.8 274 51.1
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 5.1e-64 248.4 232 54.3
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 5.1e-64 248.4 261 52.9
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 5.1e-64 248.4 234 54.3
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.1e-63 247.3 231 53.2
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.5e-63 246.9 234 57.3
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 5.7e-63 245.0 223 58.7
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 3.1e-61 239.2 220 56.4
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.7e-59 233.4 224 54.5
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 2.9e-59 232.6 214 56.5
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 5.0e-59 231.9 216 52.8
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 8.5e-59 231.1 229 52.8
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.6e-57 226.9 218 55.0
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.4e-56 223.8 246 48.8
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 8.8e-56 221.1 163 66.9
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 2.0e-55 219.9 185 70.8
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.7e-54 216.9 218 53.2
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.8e-54 216.1 241 48.1
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 5.9e-52 208.4 222 52.3
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 2.9e-51 206.1 161 65.2
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 1.1e-50 204.1 169 60.4
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 5.5e-50 201.8 172 58.7
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.6e-49 199.1 176 58.5
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 6.1e-49 198.4 221 47.5
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.2e-46 189.9 141 69.5
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.8e-46 189.5 162 61.7
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 4.8e-46 188.7 145 66.2
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 1.8e-45 186.8 154 61.7
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 4.1e-45 185.7 221 49.8
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 8.8e-40 167.9 221 43.9
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 2.0e-39 166.8 204 48.5
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.3e-39 166.0 222 44.1
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.4e-37 160.6 219 42.5
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 2.6e-36 156.4 233 42.1
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.5e-36 156.0 187 46.5
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 3.5e-36 156.0 226 48.2
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.8e-35 152.5 193 44.6
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.6e-33 147.1 115 63.5
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 2.1e-33 146.7 204 50.0
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 2.1e-33 146.7 204 50.0
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 6.1e-33 145.2 116 62.9
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 8.0e-33 144.8 115 62.6
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.4e-32 144.1 144 52.1
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 2.6e-31 139.8 218 35.3
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 9.8e-31 137.9 191 41.4
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.1e-29 132.9 141 50.4
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 1.2e-28 131.0 126 53.2
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.7e-28 129.8 144 50.0
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 3.5e-28 129.4 217 34.6
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 5.9e-28 128.6 190 48.4
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.6e-23 113.2 90 62.2
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.2e-22 110.2 181 38.7
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 2.7e-20 103.2 53 98.1
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 5.9e-20 102.1 98 53.1
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 1.7e-19 100.5 52 96.2
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 2.3e-19 100.1 53 96.2
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 2.3e-19 100.1 53 96.2
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 2.3e-19 100.1 116 51.7
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 3.3e-18 96.3 137 40.9
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 7.2e-18 95.1 174 39.1
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 7.2e-18 95.1 79 63.3
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 7.2e-18 95.1 79 63.3
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 9.5e-18 94.7 156 37.2
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 4.7e-17 92.4 87 55.2
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.7e-17 92.4 77 59.7
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.4e-16 90.9 171 36.3
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.2e-16 89.0 58 74.1
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.5e-15 87.4 101 47.5
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.4e-15 86.3 70 57.1
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 9.8e-15 84.7 236 29.7
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.1e-13 81.3 53 73.6
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.8e-13 80.5 75 61.3
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 3.2e-13 79.7 75 54.7
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 9.2e-13 78.2 148 35.8
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 9.2e-13 78.2 77 51.9
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.6e-12 77.4 80 46.2
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.6e-09 67.4 89 43.8
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.0e-08 64.7 79 44.3
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 5.2e-08 62.4 53 56.6
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 7.5e-07 58.5 115 36.5
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 9.8e-07 58.2 70 42.9


User provided reference genes

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