Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 1.0e-149 533.5 287 100.0
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 2.9e-149 531.9 287 99.7
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 3.5e-142 508.4 287 96.2
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 4.0e-138 495.0 290 94.1
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 8.3e-136 487.3 292 93.2
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 1.2e-129 466.8 298 88.9
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 2.1e-107 392.9 308 74.4
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.2e-103 379.0 330 68.2
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 8.4e-96 354.4 315 66.3
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 5.8e-89 331.6 315 69.2
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.1e-83 313.2 314 63.7
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 2.4e-82 309.7 305 66.6
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.7e-67 259.2 331 52.3
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 1.4e-61 240.7 301 55.5
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 8.2e-43 178.3 333 44.4
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.4e-42 177.6 320 42.5
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 1.0e-40 171.4 312 41.7
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 8.5e-40 168.3 328 39.6
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.9e-39 167.2 335 43.3
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 7.2e-39 165.2 329 43.5
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.2e-38 164.5 342 40.4
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.2e-38 164.5 344 41.3
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.0e-37 161.4 331 40.2
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 3.0e-37 159.8 337 39.2
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 8.8e-37 158.3 251 48.6
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-36 157.5 331 38.4
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 5.7e-36 155.6 350 38.0
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.3e-35 154.5 320 38.1
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.3e-35 154.5 336 38.4
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 1.7e-35 154.1 331 37.8
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.7e-35 154.1 320 38.4
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.7e-35 154.1 343 37.9
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 2.2e-35 153.7 340 38.5
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 2.8e-35 153.3 319 39.2
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.8e-35 153.3 331 41.4
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.1e-34 149.4 320 37.5
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 5.3e-34 149.1 228 44.3
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 5.3e-34 149.1 340 35.3
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.6e-33 147.5 341 37.2
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 7.7e-33 145.2 345 36.8
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.2e-32 143.7 338 36.4
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 6.5e-32 142.1 338 37.3
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.5e-31 141.0 338 34.3
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.5e-31 140.2 219 43.8
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 5.5e-31 139.0 338 36.7
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 9.4e-31 138.3 338 36.7
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.2e-30 137.9 299 42.1
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 4.7e-30 136.0 295 40.7
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 8.0e-30 135.2 333 36.0
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.4e-29 134.4 324 36.4
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 4.0e-29 132.9 305 41.6
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 5.2e-29 132.5 336 37.2
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 6.8e-29 132.1 318 36.2
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 6.8e-29 132.1 230 41.7
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 6.8e-29 132.1 230 41.7
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 8.8e-29 131.7 207 46.9
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 1.2e-28 131.3 300 36.3
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 1.2e-28 131.3 230 41.3
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 1.2e-28 131.3 230 41.3
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.0e-28 130.6 325 35.7
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 2.6e-28 130.2 316 37.0
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 3.4e-28 129.8 356 39.0
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 3.4e-28 129.8 230 41.3
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 4.4e-28 129.4 326 35.9
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 7.5e-28 128.6 335 35.8
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 9.8e-28 128.3 337 38.3
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 9.8e-28 128.3 230 41.3
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 9.8e-28 128.3 230 41.3
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.3e-27 127.9 303 38.3
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.7e-27 127.5 294 41.2
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.7e-27 127.5 327 37.0
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.7e-27 126.3 305 38.7
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 4.8e-27 125.9 346 36.4
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 1.8e-26 124.0 297 38.0
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 1.8e-26 124.0 297 38.0
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 1.8e-26 124.0 305 36.1
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 2.4e-26 123.6 292 36.6
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 2.4e-26 123.6 320 33.1
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.1e-26 123.2 324 36.1
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 4.1e-26 122.9 341 34.3
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 5.4e-26 122.5 325 33.5
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 5.4e-26 122.5 293 36.9
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.2e-25 121.3 291 38.8
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.2e-25 121.3 312 36.9
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 2.7e-25 120.2 280 41.8
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 2.7e-25 120.2 306 37.3
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 3.5e-25 119.8 319 33.2
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 4.5e-25 119.4 346 35.3
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 7.7e-25 118.6 206 41.3
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.7e-24 117.5 300 39.0
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 1.7e-24 117.5 299 36.5
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 1.7e-24 117.5 300 36.3
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-24 117.5 206 41.3
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 2.9e-24 116.7 305 34.8
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 6.6e-24 115.5 296 35.5
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 6.6e-24 115.5 263 36.5
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.1e-23 114.8 296 37.2
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 2.5e-23 113.6 208 40.9
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 2.5e-23 113.6 294 37.1
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 3.3e-23 113.2 330 35.5
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 5.5e-23 112.5 305 33.8
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 5.5e-23 112.5 343 32.1
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 9.5e-23 111.7 290 35.2
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.1e-22 110.5 171 45.6
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 3.6e-22 109.8 230 38.3
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 6.1e-22 109.0 309 35.3
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 8.0e-22 108.6 312 34.0
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.0e-21 108.2 210 42.9
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.0e-21 108.2 333 33.9
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 8.9e-21 105.1 312 33.3
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 1.2e-20 104.8 248 40.3
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 1.2e-20 104.8 283 33.9
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 2.2e-19 100.5 291 36.4
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 2.8e-19 100.1 342 32.2
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 1.1e-18 98.2 290 35.9
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 1.8e-18 97.4 299 34.4
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 3.2e-18 96.7 294 35.7
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 4.1e-18 96.3 304 31.9
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 7.0e-18 95.5 278 32.4
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.2e-17 94.7 295 33.2
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.2e-17 94.7 314 33.4
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 2.0e-17 94.0 287 33.4
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 2.7e-17 93.6 307 30.9
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 7.8e-17 92.0 266 36.8
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 2.3e-16 90.5 294 33.0
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 3.9e-16 89.7 340 30.0
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 1.5e-15 87.8 330 33.6
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.5e-15 87.8 222 36.0
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.6e-15 85.9 330 30.0
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 5.6e-15 85.9 79 64.6
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 9.5e-15 85.1 304 30.9
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.6e-14 84.3 303 31.4
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 1.6e-14 84.3 357 29.1
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 5.2e-13 79.3 406 30.0
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 1.5e-12 77.8 207 39.6
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 1.7e-11 74.3 85 52.9
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 2.9e-11 73.6 298 29.2
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 3.7e-11 73.2 262 31.3
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 1.1e-10 71.6 229 35.8
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.9e-10 70.9 165 37.6
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 5.4e-10 69.3 89 52.8
BolC4t28067H Brassica oleracea HOM05D004499 ORTHO05D004928 1.2e-09 68.2 50 78.0
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.0e-09 67.4 97 40.2
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 7.8e-09 65.5 128 35.9
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 3.0e-08 63.5 302 30.5
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 3.0e-08 63.5 295 30.2
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 8.6e-08 62.0 310 29.0
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.6e-07 59.3 196 30.6
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 8.0e-06 55.5 303 26.1


User provided reference genes

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