Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 1.2e-49 199.9 134 100.0
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 8.9e-40 167.2 117 99.1
BolC4t22663H Brassica oleracea HOM05D004973 ORTHO05D006119 6.4e-30 134.4 99 97.0
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 7.8e-28 127.5 118 66.1
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 3.3e-26 122.1 120 61.7
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 2.8e-25 119.0 71 93.0
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 4.7e-25 118.2 118 61.0
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 8.1e-25 117.5 121 58.7
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 1.8e-24 116.3 119 59.7
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 1.8e-24 116.3 119 59.7
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 1.8e-24 116.3 119 59.7
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 1.5e-23 113.2 114 61.4
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 4.4e-23 111.7 117 57.3
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 1.3e-22 110.2 115 58.3
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 1.7e-22 109.8 66 92.4
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 3.7e-22 108.6 124 75.8
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 3.7e-22 108.6 124 75.8
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 1.6e-20 103.2 66 86.4
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 3.5e-20 102.1 66 84.8
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 3.7e-14 82.0 66 71.2
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 4.9e-14 81.6 63 71.4
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 9.2e-13 77.4 65 66.2
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 1.2e-12 77.0 67 65.7
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.2e-12 77.0 67 64.2
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.6e-12 76.6 73 63.0
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.1e-12 76.3 65 64.6
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 3.5e-12 75.5 69 60.9
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 3.5e-12 75.5 64 67.2
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 4.6e-12 75.1 65 64.6
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 4.6e-12 75.1 61 68.9
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 4.6e-12 75.1 68 61.8
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 7.8e-12 74.3 67 62.7
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 7.8e-12 74.3 61 67.2
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 7.8e-12 74.3 66 65.2
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 1.0e-11 73.9 82 54.9
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.0e-11 73.9 69 60.9
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.3e-11 73.6 64 64.1
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.7e-11 73.2 65 64.6
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 2.3e-11 72.8 69 59.4
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 2.3e-11 72.8 64 60.9
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 2.3e-11 72.8 63 65.1
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 3.0e-11 72.4 128 43.8
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 3.0e-11 72.4 64 64.1
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 3.9e-11 72.0 80 53.8
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.9e-11 72.0 64 62.5
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 3.9e-11 72.0 61 68.9
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 3.9e-11 72.0 61 68.9
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 3.9e-11 72.0 64 64.1
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 5.1e-11 71.6 67 61.2
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 5.1e-11 71.6 61 67.2
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 5.1e-11 71.6 67 59.7
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.1e-11 71.6 62 64.5
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 5.1e-11 71.6 73 63.0
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 6.6e-11 71.2 62 64.5
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 6.6e-11 71.2 65 61.5
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 6.6e-11 71.2 64 64.1
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 6.6e-11 71.2 73 58.9
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 6.6e-11 71.2 73 58.9
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 6.6e-11 71.2 73 60.3
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 8.6e-11 70.9 71 57.7
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 8.6e-11 70.9 73 58.9
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 8.6e-11 70.9 67 62.7
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 8.6e-11 70.9 62 62.9
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.1e-10 70.5 62 62.9
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.1e-10 70.5 62 62.9
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.9e-10 69.7 61 65.6
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 1.9e-10 69.7 61 67.2
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 1.9e-10 69.7 62 59.7
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 1.9e-10 69.7 58 65.5
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 2.5e-10 69.3 73 58.9
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.5e-10 69.3 64 62.5
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 2.5e-10 69.3 64 62.5
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 3.3e-10 68.9 62 61.3
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 3.3e-10 68.9 62 64.5
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 3.3e-10 68.9 61 65.6
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 3.3e-10 68.9 62 64.5
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 3.3e-10 68.9 63 61.9
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 3.3e-10 68.9 73 57.5
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 4.3e-10 68.6 65 61.5
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 4.3e-10 68.6 81 53.1
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 4.3e-10 68.6 60 66.7
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 5.6e-10 68.2 61 63.9
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 5.6e-10 68.2 76 55.3
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 5.6e-10 68.2 73 57.5
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 7.3e-10 67.8 66 59.1
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 7.3e-10 67.8 75 52.0
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 7.3e-10 67.8 73 56.2
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 7.3e-10 67.8 62 59.7
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 9.6e-10 67.4 82 51.2
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 9.6e-10 67.4 61 62.3
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 1.2e-09 67.0 76 51.3
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 1.2e-09 67.0 71 54.9
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.6e-09 66.6 67 58.2
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.6e-09 66.6 62 58.1
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 1.6e-09 66.6 61 62.3
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 1.6e-09 66.6 70 57.1
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.6e-09 66.6 73 56.2
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 2.8e-09 65.9 59 62.7
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 4.7e-09 65.1 74 54.1
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 4.7e-09 65.1 58 63.8
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 6.2e-09 64.7 71 56.3
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 6.2e-09 64.7 61 60.7
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 6.2e-09 64.7 71 50.7
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 8.1e-09 64.3 79 51.9
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.1e-08 63.9 70 60.0
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 1.1e-08 63.9 66 51.5
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 1.1e-08 63.9 62 59.7
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.4e-08 63.5 73 57.5
BcaC02g11850 Brassica carinata HOM05D004973 ORTHO05D006119 1.8e-08 63.2 38 89.5
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 3.1e-08 62.4 61 60.7
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 4.0e-08 62.0 58 60.3
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 4.0e-08 62.0 62 59.7
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 4.0e-08 62.0 75 54.7
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 5.2e-08 61.6 65 53.8
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 6.8e-08 61.2 61 59.0
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 8.9e-08 60.8 71 57.7
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 1.2e-07 60.5 64 56.2
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.5e-07 60.1 65 52.3
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 2.6e-07 59.3 77 51.9
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 3.4e-07 58.9 65 56.9
BcaB02g09290 Brassica carinata HOM05D004973 ORTHO05D006119 4.4e-07 58.5 35 85.7
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 4.4e-07 58.5 69 49.3
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 7.6e-07 57.8 73 50.7
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 7.6e-07 57.8 51 62.7
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.3e-06 57.0 73 50.7
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 3.8e-06 55.5 66 53.0


User provided reference genes

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