Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 4.8e-213 744.2 365 100.0
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 1.4e-212 742.7 365 99.7
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 3.0e-199 698.4 365 94.8
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 8.8e-199 696.8 365 94.5
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.3e-189 666.4 364 90.4
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.2e-185 651.7 365 87.9
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 4.1e-180 634.8 365 84.7
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.5e-174 616.3 366 82.5
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.1e-172 608.6 366 81.4
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 7.0e-172 607.4 367 81.5
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 7.7e-171 604.0 366 81.1
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 2.2e-170 602.4 367 80.4
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 8.5e-170 600.5 367 81.5
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 2.7e-168 595.5 370 79.7
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 3.4e-166 588.6 370 78.9
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 3.4e-166 588.6 369 79.4
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 3.4e-166 588.6 369 78.9
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-165 585.5 369 78.9
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.8e-165 585.5 369 78.9
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 6.3e-165 584.3 367 78.7
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 8.3e-165 583.9 367 78.7
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 8.3e-165 583.9 371 78.7
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.0e-162 577.0 367 78.5
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 8.6e-162 573.9 365 75.6
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 4.7e-160 568.2 365 75.9
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 1.4e-159 566.6 365 75.6
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.3e-157 560.1 366 74.0
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 3.2e-156 555.4 367 73.8
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 4.1e-156 555.1 366 74.0
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 7.0e-156 554.3 368 74.2
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 7.0e-156 554.3 365 74.2
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 7.0e-156 554.3 374 72.2
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 5.0e-154 548.1 366 73.5
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 2.5e-153 545.8 324 78.4
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 2.5e-153 545.8 365 72.3
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 2.5e-153 545.8 374 71.9
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 2.5e-153 545.8 308 81.8
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 3.3e-153 545.4 365 71.8
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 5.6e-153 544.7 311 80.4
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 7.3e-153 544.3 372 71.0
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 9.5e-153 543.9 381 70.3
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 1.6e-152 543.1 372 70.4
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 2.1e-152 542.7 366 73.0
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 2.8e-152 542.3 371 72.0
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 2.8e-152 542.3 325 78.2
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 3.6e-152 542.0 369 71.0
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.0e-151 540.4 365 71.5
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.0e-151 540.4 365 72.1
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 1.8e-151 539.7 374 70.1
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 1.8e-151 539.7 365 71.0
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 3.1e-151 538.9 365 71.0
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 5.2e-151 538.1 334 76.0
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 5.2e-151 538.1 373 71.3
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 1.2e-150 537.0 312 78.8
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.5e-150 536.6 368 71.5
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 2.6e-150 535.8 365 70.7
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 5.8e-150 534.6 367 72.2
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 7.5e-150 534.3 365 71.5
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 9.8e-150 533.9 321 74.5
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 9.8e-150 533.9 318 78.9
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.3e-149 533.5 373 70.8
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.7e-149 533.1 368 72.0
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 2.2e-149 532.7 341 73.6
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.9e-149 532.3 366 72.7
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 3.7e-149 531.9 374 70.1
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 3.7e-149 531.9 378 68.8
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 4.9e-149 531.6 319 74.9
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 4.9e-149 531.6 358 70.9
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 1.1e-148 530.4 367 70.8
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 3.2e-148 528.9 369 69.1
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 4.1e-148 528.5 365 70.4
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 7.0e-148 527.7 358 70.9
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.2e-147 526.9 344 73.5
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 2.7e-147 525.8 367 69.5
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 3.5e-147 525.4 366 69.1
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 4.6e-147 525.0 312 76.6
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 4.6e-147 525.0 365 69.9
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 4.6e-147 525.0 321 75.4
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 4.6e-147 525.0 366 69.7
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 1.3e-146 523.5 370 70.3
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 1.3e-146 523.5 354 72.3
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.7e-146 523.1 319 74.0
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 5.0e-146 521.5 361 69.8
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 3.3e-145 518.8 296 78.7
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 5.6e-145 518.1 370 68.1
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.3e-145 517.7 351 70.4
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 1.2e-144 516.9 368 69.3
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 2.1e-144 516.2 380 66.6
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 2.1e-144 516.2 389 65.8
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.8e-144 515.8 311 77.8
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.1e-143 513.8 365 68.8
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.4e-143 513.5 365 68.5
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 3.1e-143 512.3 367 67.8
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 4.0e-143 511.9 364 69.2
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 5.2e-143 511.5 349 69.3
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.2e-142 510.4 313 75.4
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 1.5e-142 510.0 363 66.9
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 2.6e-142 509.2 338 76.3
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 5.8e-142 508.1 358 67.6
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.1e-140 503.8 364 67.0
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.2e-139 500.4 364 68.7
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.6e-139 500.0 291 76.6
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.6e-139 500.0 326 72.7
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 4.3e-137 491.9 300 75.7
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 5.6e-137 491.5 483 54.2
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.1e-135 487.3 387 64.6
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 4.0e-135 485.3 328 72.3
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 3.4e-134 482.3 316 73.1
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 2.4e-132 476.1 366 68.6
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 4.1e-132 475.3 395 62.0
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.2e-128 461.5 326 70.2
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 3.1e-127 459.1 337 70.6
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.5e-126 456.8 277 76.9
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 2.1e-123 446.4 292 70.2
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 7.3e-121 438.0 328 65.9
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.4e-119 433.7 286 70.3
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 7.9e-115 417.9 313 64.9
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.2e-109 399.8 242 75.6
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.4e-108 397.1 291 64.9
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 7.9e-107 391.3 285 64.9
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 4.8e-104 382.1 284 66.5
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 5.3e-103 378.6 337 61.7
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 6.5e-101 371.7 285 61.1
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 1.1e-97 360.9 257 69.3
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 1.5e-97 360.5 269 63.9
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.5e-94 350.5 294 57.5
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 3.4e-94 349.4 258 66.7
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 1.4e-87 327.4 290 58.6
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 1.2e-78 297.7 168 82.1
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.2e-75 287.7 159 81.8
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.4e-66 257.7 229 58.1
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 4.2e-60 236.1 147 80.3
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.0e-58 231.5 127 81.9
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 4.8e-56 222.6 133 75.9
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-53 214.5 147 74.8
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.7e-53 214.2 326 43.3
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 4.7e-51 206.1 147 73.5
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 4.5e-46 189.5 147 68.0
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 7.3e-44 182.2 133 64.7
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 9.8e-41 171.8 141 62.4
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 7.3e-36 155.6 108 64.8
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.1e-27 127.5 72 80.6
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 2.6e-25 120.6 67 88.1
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 2.6e-25 120.6 67 88.1
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 3.5e-22 110.2 64 79.7
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 1.6e-19 101.3 57 77.2
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 1.6e-19 101.3 113 50.4
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 2.2e-16 90.9 45 88.9
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 4.9e-16 89.7 45 88.9
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 8.4e-16 89.0 44 90.9
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 3.3e-12 77.0 35 91.4
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 5.6e-12 76.3 41 75.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 7.6e-09 65.9 37 83.8
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 1.4e-07 61.6 49 63.3
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 4.2e-07 60.1 58 55.2
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 1.2e-06 58.5 117 29.1
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 7.8e-06 55.8 51 54.9


User provided reference genes

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