Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 1.8e-257 892.1 469 100.0
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.0e-255 886.3 469 99.4
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.7e-250 869.0 469 97.4
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 2.4e-249 865.1 469 96.8
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 9.1e-249 863.2 468 98.3
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 1.5e-243 845.9 469 95.3
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 8.2e-242 840.1 469 94.0
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 8.2e-242 840.1 469 93.8
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 8.2e-242 840.1 469 93.8
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 2.0e-240 835.5 469 93.8
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 1.3e-239 832.8 471 93.8
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 8.5e-239 830.1 495 89.3
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 4.2e-238 827.8 469 93.2
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 1.2e-237 826.2 469 92.3
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.7e-234 815.8 469 90.8
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 3.1e-233 811.6 470 90.0
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 1.1e-222 776.5 469 87.2
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 6.4e-210 734.2 465 83.4
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 1.6e-205 719.5 409 92.7
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 6.4e-194 681.0 473 77.2
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 9.2e-193 677.2 464 76.1
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.6e-192 676.4 443 77.9
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 7.3e-190 667.5 482 73.9
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 1.6e-189 666.4 471 75.2
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 2.1e-189 666.0 465 74.8
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 4.0e-188 661.8 471 73.7
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 5.8e-187 657.9 471 72.6
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 7.6e-187 657.5 465 75.1
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 7.6e-187 657.5 472 73.7
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.7e-186 656.4 471 74.5
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.2e-186 656.0 473 73.6
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 2.9e-186 655.6 444 77.0
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.4e-185 653.3 473 72.9
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 1.9e-185 652.9 448 76.3
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 7.1e-185 651.0 472 74.2
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 2.7e-184 649.0 476 73.1
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 3.5e-184 648.7 462 72.5
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 4.6e-184 648.3 472 73.9
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 7.8e-184 647.5 462 72.5
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.3e-183 646.7 467 73.0
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.7e-183 646.4 469 73.6
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.7e-183 646.4 473 72.7
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 1.7e-183 646.4 464 73.9
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.7e-183 646.4 444 75.9
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 1.7e-183 646.4 470 73.8
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 2.3e-183 646.0 469 74.4
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 1.9e-182 642.9 469 73.1
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 2.5e-182 642.5 470 73.4
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 3.3e-182 642.1 470 73.8
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 3.3e-182 642.1 444 75.5
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 5.6e-182 641.3 448 75.4
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 5.6e-182 641.3 509 69.5
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 5.6e-182 641.3 469 73.6
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 7.3e-182 641.0 468 72.2
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 9.6e-182 640.6 471 72.2
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 9.6e-182 640.6 471 72.4
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.2e-181 640.2 475 72.2
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 1.2e-181 640.2 476 71.6
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 4.7e-181 638.3 463 72.8
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 8.1e-181 637.5 450 75.1
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.1e-180 637.1 477 71.3
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.4e-180 636.7 485 70.5
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 1.4e-180 636.7 475 72.4
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.8e-180 636.3 466 72.7
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 4.0e-180 635.2 463 71.7
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 5.3e-180 634.8 461 73.1
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 6.9e-180 634.4 453 72.8
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 5.8e-179 631.3 464 70.7
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 5.8e-179 631.3 468 71.4
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 9.9e-179 630.6 444 75.0
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.3e-178 630.2 436 76.1
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 1.3e-178 630.2 468 72.2
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.9e-178 629.0 462 71.2
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 3.8e-178 628.6 443 74.5
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 4.9e-178 628.2 467 72.6
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 4.9e-178 628.2 444 73.0
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 1.1e-177 627.1 439 74.9
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 3.2e-177 625.5 473 70.6
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 4.2e-177 625.2 461 71.1
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 5.4e-177 624.8 461 70.5
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.2e-176 623.6 478 69.9
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 1.6e-176 623.2 464 71.8
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 2.7e-176 622.5 465 71.0
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 1.5e-174 616.7 479 69.7
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 2.8e-173 612.5 460 71.3
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.2e-171 607.1 409 77.5
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 1.5e-171 606.7 456 70.0
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 2.0e-171 606.3 399 78.9
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 2.6e-171 605.9 459 69.7
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 3.4e-171 605.5 445 73.0
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.8e-167 593.2 461 70.1
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 8.7e-167 590.9 484 65.9
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.8e-164 583.2 439 70.8
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 6.9e-164 581.3 422 70.9
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 2.6e-163 579.3 423 71.2
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 5.5e-161 571.6 422 73.9
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 1.6e-160 570.1 398 75.4
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 2.1e-160 569.7 549 59.9
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.8e-159 566.6 414 73.4
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 2.4e-156 556.2 417 72.7
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.1e-153 547.4 449 66.4
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.0e-151 540.8 423 66.9
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 2.5e-150 536.2 385 70.6
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.6e-149 533.5 409 69.9
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 8.2e-149 531.2 389 73.5
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 2.8e-133 479.6 434 59.0
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 5.0e-130 468.8 339 74.3
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.6e-128 463.8 360 66.7
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 1.0e-127 461.1 432 63.2
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 7.0e-124 448.4 472 57.2
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 4.5e-123 445.7 329 68.7
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 5.5e-121 438.7 430 57.0
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 3.0e-119 433.0 462 54.1
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 7.7e-115 418.3 327 71.6
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 7.0e-100 368.6 388 55.4
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.9e-98 362.8 251 76.5
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 2.1e-75 287.3 231 68.4
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.0e-75 285.8 235 66.8
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 7.8e-75 285.4 202 74.8
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.4e-71 274.6 195 73.3
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.3e-65 253.4 204 66.7
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 2.1e-64 250.8 218 60.6
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.1e-55 221.9 460 36.5
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.4e-55 220.7 182 67.0
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 2.4e-55 220.7 147 73.5
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.1e-41 175.3 122 68.0
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.9e-37 160.6 140 63.6
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.8e-37 160.2 137 64.2
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 1.0e-29 135.6 103 67.0
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 1.7e-29 134.8 264 37.9
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 2.2e-29 134.4 131 62.6
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 3.8e-29 133.7 131 61.8
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 5.0e-29 133.3 158 53.8
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 6.5e-29 132.9 131 61.8
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 6.5e-29 132.9 131 61.8
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 6.5e-29 132.9 131 61.8
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 8.5e-29 132.5 131 61.8
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-28 132.1 131 61.1
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.7e-27 127.5 103 65.0
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 7.9e-27 125.9 137 59.1
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 1.0e-26 125.6 264 36.0
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 3.0e-26 124.0 133 59.4
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 6.7e-26 122.9 130 56.9
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 3.1e-23 114.0 101 62.4
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.3e-21 108.6 100 61.0
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 2.9e-21 107.5 62 85.5
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 2.1e-19 101.3 121 52.1
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 7.9e-19 99.4 111 57.7
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 1.4e-18 98.6 125 52.0
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 2.3e-18 97.8 131 50.4
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 6.7e-18 96.3 72 73.6
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 8.8e-18 95.9 108 58.3
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 3.1e-15 87.4 84 56.0
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 2.7e-11 74.3 93 47.3
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 4.7e-11 73.6 46 69.6
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 4.7e-11 73.6 46 69.6
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 6.1e-11 73.2 49 79.6
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 6.1e-11 73.2 64 65.6
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 6.1e-11 73.2 166 35.5
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 1.0e-10 72.4 90 53.3
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.4e-10 72.0 93 46.2
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 4.0e-10 70.5 103 45.6
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 5.2e-10 70.1 175 32.6
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 8.8e-10 69.3 124 42.7
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 1.3e-08 65.5 44 79.5
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 4.8e-08 63.5 46 76.1
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 4.1e-07 60.5 48 68.8
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 1.6e-06 58.5 39 76.9
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 1.6e-06 58.5 83 41.0


User provided reference genes

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