Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 1.2e-203 713.0 364 100.0
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 1.3e-202 709.5 364 99.5
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 3.4e-195 684.9 364 96.4
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 5.9e-195 684.1 364 95.3
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.0e-194 683.3 364 95.3
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 1.1e-193 679.9 364 94.5
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 7.4e-190 667.2 364 93.4
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 2.2e-189 665.6 364 92.3
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 1.4e-183 646.4 364 88.7
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 3.0e-183 645.2 364 89.3
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.0e-182 642.5 364 88.7
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 8.2e-173 610.5 364 84.6
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.0e-170 603.6 361 82.8
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.2e-169 598.6 367 81.2
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 1.9e-153 546.2 365 73.7
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 3.6e-152 542.0 363 73.3
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 4.0e-151 538.5 363 73.0
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 8.9e-151 537.3 363 73.0
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 9.8e-150 533.9 363 72.7
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.8e-149 532.3 358 72.6
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.8e-148 529.6 355 72.7
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 7.8e-147 524.2 358 72.3
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.3e-146 523.5 362 69.9
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 2.9e-146 522.3 360 69.7
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.9e-146 522.3 356 71.6
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.9e-146 522.3 356 71.6
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 3.8e-146 521.9 363 71.1
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 5.0e-146 521.5 360 69.7
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.0e-146 521.5 356 71.3
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 8.6e-146 520.8 360 69.4
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 1.1e-145 520.4 416 64.4
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 2.1e-144 516.2 371 67.7
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 2.1e-144 516.2 362 69.6
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.8e-143 513.1 362 68.0
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 2.3e-143 512.7 371 66.6
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 6.8e-143 511.1 361 68.4
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 2.6e-142 509.2 355 68.5
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 3.4e-142 508.8 371 66.8
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 9.8e-142 507.3 363 68.3
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.3e-141 506.9 361 68.4
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 2.9e-141 505.8 363 68.6
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 3.7e-141 505.4 361 67.9
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 4.9e-141 505.0 361 67.9
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.9e-140 503.1 363 67.5
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 3.2e-140 502.3 363 66.7
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 5.4e-140 501.5 362 68.0
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 9.2e-140 500.7 362 65.5
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.2e-139 500.4 368 66.6
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 2.7e-139 499.2 363 66.1
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 4.6e-139 498.4 363 67.8
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.3e-138 496.9 362 64.6
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.7e-138 496.5 361 66.5
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.7e-138 496.5 363 66.1
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 2.3e-138 496.1 355 65.9
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 3.0e-138 495.7 364 66.8
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 1.5e-137 493.4 362 64.4
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.5e-137 493.4 367 66.2
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.5e-137 493.4 367 66.2
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 3.3e-137 492.3 375 64.3
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 4.3e-137 491.9 363 66.4
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.2e-136 490.3 369 67.5
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 1.6e-136 490.0 356 66.3
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.6e-136 490.0 349 67.9
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 4.7e-136 488.4 359 68.5
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 8.0e-136 487.6 363 65.8
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.4e-135 486.9 356 69.1
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.8e-135 486.5 393 62.8
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 2.3e-135 486.1 361 65.9
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 5.2e-135 485.0 367 64.6
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 6.8e-135 484.6 362 65.5
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 2.0e-134 483.0 361 66.2
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.4e-134 481.9 393 61.6
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.7e-133 479.9 387 62.8
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 8.3e-133 477.6 387 62.5
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.9e-132 476.5 361 64.5
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 2.4e-132 476.1 367 65.1
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.4e-132 476.1 380 63.2
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 3.2e-132 475.7 360 64.4
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 7.0e-132 474.6 359 66.0
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.2e-131 473.8 359 64.6
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.6e-131 473.4 355 64.5
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.6e-131 473.4 362 64.9
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.6e-131 473.4 387 62.0
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 6.6e-130 468.0 365 65.2
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 8.6e-130 467.6 393 61.1
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 4.3e-129 465.3 351 65.8
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.8e-127 459.9 322 68.3
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 6.4e-125 451.4 363 61.7
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 6.4e-125 451.4 370 62.2
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 2.7e-123 446.0 354 61.9
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 3.5e-123 445.7 364 63.5
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 3.5e-123 445.7 364 63.5
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.3e-122 443.0 362 62.2
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 3.0e-122 442.6 363 61.4
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.5e-121 440.3 311 69.1
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.9e-121 439.9 370 61.9
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 4.3e-121 438.7 328 64.6
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 4.3e-121 438.7 316 66.8
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 2.1e-120 436.4 364 62.4
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 1.8e-119 433.3 291 70.8
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 3.1e-119 432.6 364 60.2
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.0e-118 429.9 363 61.2
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 1.7e-114 416.8 298 68.8
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 5.6e-113 411.8 296 67.9
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.3e-112 410.6 354 58.2
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 1.1e-111 407.5 296 64.9
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 1.9e-108 396.7 292 65.8
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-107 394.0 387 55.8
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.4e-103 380.6 331 58.3
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.8e-102 375.2 285 66.0
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 6.2e-96 355.1 287 61.0
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 1.2e-94 350.9 362 48.9
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.0e-93 347.8 349 51.6
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 2.2e-93 346.7 363 52.1
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 3.8e-93 345.9 358 51.4
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 1.6e-91 340.5 341 49.6
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.7e-91 339.7 362 50.0
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 4.6e-91 339.0 335 50.1
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 6.0e-91 338.6 368 51.4
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 6.7e-90 335.1 368 51.9
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 6.2e-88 328.6 319 51.4
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.4e-87 327.4 363 50.7
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 5.5e-84 315.5 270 59.6
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 4.7e-59 232.6 152 73.0
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 3.3e-57 226.5 328 39.0
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 5.9e-46 189.1 136 64.7
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 8.0e-43 178.7 345 32.5
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 7.5e-41 172.2 138 67.4
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 9.8e-41 171.8 105 81.9
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 7.0e-39 165.6 122 69.7
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.8e-35 153.7 137 56.2
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 5.7e-33 146.0 337 32.3
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 2.0e-30 137.5 115 62.6
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.6e-29 132.5 83 73.5
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.9e-28 131.0 81 74.1
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.9e-28 131.0 123 53.7
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.3e-28 129.0 85 68.2
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 8.0e-27 125.6 80 76.2
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 8.9e-26 122.1 199 36.7
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.7e-24 117.9 350 26.9
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.1e-23 113.2 73 71.2
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-22 111.3 72 70.8
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-22 111.3 72 70.8
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-22 111.3 72 70.8
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.0e-22 110.9 74 68.9
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.6e-22 109.8 72 69.4
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.0e-22 109.4 74 67.6
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.0e-22 109.4 72 70.8
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.3e-21 107.5 70 68.6
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.6e-21 105.5 74 63.5
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-20 105.1 95 58.9
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-19 101.7 104 57.7
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.3e-18 97.4 87 63.2
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 9.8e-17 92.0 106 46.2
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 4.9e-16 89.7 106 45.3
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 7.1e-15 85.9 61 68.9
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.7e-14 84.0 73 54.8
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.8e-14 82.4 51 76.5
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 3.0e-13 80.5 45 82.2
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 3.6e-11 73.6 67 61.2
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.3e-10 70.9 56 66.1
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.3e-10 70.9 86 45.3
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 2.6e-09 67.4 46 71.7
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.4e-08 62.8 89 44.9
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 8.4e-08 62.4 42 73.8
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 4.1e-07 60.1 44 72.7
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 5.4e-07 59.7 41 70.7
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 2.7e-06 57.4 41 65.9
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 6.0e-06 56.2 49 49.0


User provided reference genes

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