Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 5.6e-212 740.7 388 100.0
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 3.9e-205 718.0 388 97.4
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 2.0e-193 679.1 408 90.4
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 5.3e-186 654.4 392 90.1
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 2.6e-185 652.1 392 89.8
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 5.7e-164 581.3 398 81.9
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 7.2e-143 511.1 419 69.5
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.4e-132 475.3 411 68.1
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 4.0e-125 452.2 410 64.6
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 2.6e-124 449.5 421 66.5
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 2.3e-120 436.4 421 62.2
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 2.5e-119 433.0 423 64.5
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 6.8e-117 424.9 413 62.0
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.7e-115 420.2 425 63.3
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 1.6e-97 360.5 416 55.8
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 2.7e-89 333.2 406 52.2
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.5e-89 332.8 414 52.7
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 7.9e-89 331.6 420 52.4
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 7.4e-87 325.1 425 49.6
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.2e-84 317.8 421 51.8
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 5.7e-79 298.9 411 50.6
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.2e-76 291.2 408 48.5
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 4.9e-75 285.8 437 44.2
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 2.5e-74 283.5 413 48.4
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 6.1e-73 278.9 403 47.9
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.8e-70 269.2 438 42.2
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 8.2e-70 268.5 438 42.0
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.2e-68 264.6 438 41.8
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 7.7e-68 261.9 438 41.6
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 2.9e-67 260.0 429 40.8
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 3.8e-67 259.6 401 46.6
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 6.5e-67 258.8 446 40.8
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 2.5e-66 256.9 435 42.3
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 5.5e-66 255.8 416 43.3
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 9.4e-66 255.0 435 42.3
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 2.1e-65 253.8 433 41.3
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.3e-63 246.1 431 41.3
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 7.4e-63 245.4 414 43.5
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 6.3e-62 242.3 449 41.6
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 9.1e-61 238.4 437 40.5
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.2e-60 238.0 429 39.9
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.5e-60 237.7 433 40.6
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.4e-60 236.5 438 39.0
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 2.9e-59 233.4 366 45.4
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 5.0e-59 232.6 441 39.9
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 6.5e-59 232.3 424 40.1
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 6.5e-59 232.3 424 40.1
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.1e-58 231.5 424 40.1
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.5e-58 230.3 427 39.6
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.5e-58 230.3 436 39.2
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.2e-58 229.6 436 39.0
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.2e-58 229.6 373 42.1
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 3.6e-57 226.5 433 39.7
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 6.1e-57 225.7 406 40.6
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.8e-56 224.2 438 39.3
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 2.0e-55 220.7 417 39.1
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 5.7e-55 219.2 430 37.9
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 7.4e-55 218.8 418 39.7
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 9.7e-55 218.4 425 40.0
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.7e-54 217.6 401 40.4
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.8e-54 216.9 420 38.1
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 8.2e-54 215.3 425 38.6
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.1e-53 214.9 401 41.6
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 2.4e-53 213.8 437 38.0
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 2.4e-53 213.8 431 39.7
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.0e-52 210.7 429 38.5
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 2.0e-52 210.7 431 39.2
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 4.5e-52 209.5 431 39.4
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 7.7e-52 208.8 435 37.2
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.7e-51 207.6 420 38.8
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 3.8e-51 206.5 403 39.5
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 6.5e-51 205.7 424 38.2
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 6.5e-51 205.7 426 37.6
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.1e-50 204.9 428 39.0
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 4.2e-50 203.0 436 37.2
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.2e-49 201.4 421 37.1
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.7e-49 200.3 424 37.3
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.8e-48 197.6 423 37.8
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 3.9e-48 196.4 405 39.5
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 5.2e-48 196.1 413 38.7
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 6.7e-48 195.7 412 36.9
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 8.8e-48 195.3 435 37.7
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.6e-47 193.7 439 36.0
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 3.3e-47 193.4 419 36.0
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 4.4e-47 193.0 439 36.0
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 4.4e-47 193.0 436 37.6
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 7.4e-47 192.2 436 37.2
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.3e-46 191.4 443 36.3
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.2e-46 190.7 415 39.5
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 2.2e-46 190.7 466 34.3
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 2.2e-46 190.7 436 38.1
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 2.2e-46 190.7 426 35.0
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 3.7e-46 189.9 430 38.4
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.1e-45 188.3 436 37.4
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 2.4e-45 187.2 454 36.8
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 3.1e-45 186.8 431 35.7
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 4.1e-45 186.4 427 35.6
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 9.1e-45 185.3 431 37.1
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 1.6e-44 184.5 443 35.9
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 3.5e-44 183.3 425 34.6
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 7.7e-44 182.2 427 35.4
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.7e-43 181.0 424 38.4
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.9e-43 180.3 459 34.9
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.1e-42 178.3 458 35.4
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 2.5e-42 177.2 441 34.5
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 4.2e-42 176.4 434 33.6
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 4.2e-42 176.4 432 35.4
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 9.4e-42 175.3 416 37.5
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 6.1e-41 172.6 435 33.3
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.0e-40 171.8 421 34.4
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.3e-40 170.6 437 35.2
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.3e-40 170.6 438 32.9
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.0e-39 167.5 401 33.7
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 9.8e-39 165.2 379 37.7
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 1.7e-38 164.5 435 34.0
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.7e-36 157.1 462 32.7
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 4.5e-36 156.4 150 59.3
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 2.2e-35 154.1 311 36.0
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.1e-34 151.8 446 33.0
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.2e-34 150.2 379 34.3
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.5e-34 149.4 382 34.3
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.2e-33 148.3 392 33.4
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 2.7e-33 147.1 431 32.9
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.8e-30 137.1 369 34.7
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 4.1e-29 133.3 333 36.3
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.4e-29 132.9 328 35.1
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 4.5e-28 129.8 410 31.0
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 7.7e-28 129.0 412 31.1
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 3.3e-26 123.6 272 37.9
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 5.5e-26 122.9 449 31.0
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 7.2e-26 122.5 413 32.0
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 7.2e-26 122.5 411 31.4
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 7.2e-26 122.5 411 31.4
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 3.6e-25 120.2 411 31.1
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 6.1e-25 119.4 118 54.2
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 8.0e-25 119.0 407 30.2
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 4.9e-22 109.8 417 29.3
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.1e-21 106.7 368 33.2
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 3.5e-20 103.6 302 33.1
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.3e-19 101.7 358 31.3
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 2.9e-19 100.5 381 28.9
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 5.0e-19 99.8 124 46.8
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 8.6e-19 99.0 139 42.4
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 1.1e-18 98.6 195 36.4
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.5e-18 98.2 220 37.3
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.1e-17 94.4 269 34.6
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 6.1e-17 92.8 263 32.7
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 2.3e-16 90.9 50 92.0
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 6.8e-16 89.4 125 40.8
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 1.5e-15 88.2 218 32.1
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.6e-15 87.4 106 44.3
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 3.4e-15 87.0 162 38.9
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 4.9e-14 83.2 132 40.2
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 4.9e-14 83.2 428 27.3
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 8.3e-14 82.4 273 31.9
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 8.3e-14 82.4 205 33.7
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 8.3e-14 82.4 132 40.2
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 8.3e-14 82.4 289 29.8
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.1e-13 80.1 370 26.2
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 5.4e-13 79.7 72 51.4
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.4e-13 79.7 303 30.0
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 1.6e-12 78.2 100 45.0
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 1.6e-12 78.2 54 68.5
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 2.0e-12 77.8 119 37.0
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 3.3e-10 70.5 299 25.8
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 2.8e-09 67.4 135 37.0
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 6.2e-09 66.2 108 44.4
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 8.1e-09 65.9 94 38.3
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.8e-08 64.7 193 26.9
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 6.8e-08 62.8 299 28.1
Mapoly0053s0106 Marchantia polymorpha HOM05D003987 ORTHO05D004532 4.9e-06 56.6 285 24.6


User provided reference genes

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