Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p09660 Brassica napus HOM05D006079 ORTHO05D008156 9.3e-231 803.1 393 100.0
BcaC02g11943 Brassica carinata HOM05D006079 ORTHO05D008156 3.7e-227 791.2 394 99.0
BolC4t22573H Brassica oleracea HOM05D006079 ORTHO05D008156 7.2e-223 776.9 396 97.2
BcaB02g09226 Brassica carinata HOM05D006079 ORTHO05D008156 7.4e-220 766.9 394 95.2
BraA05t19766Z Brassica rapa HOM05D006079 ORTHO05D008156 9.7e-220 766.5 403 94.5
A05p08000 Brassica napus HOM05D006079 ORTHO05D008156 2.4e-218 761.9 397 94.5
BcaB02g09227 Brassica carinata HOM05D006079 ORTHO05D008156 2.0e-217 758.8 391 94.9
Thhalv10016725m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 1.8e-210 735.7 395 92.4
Sp4g20320 Schrenkiella parvula HOM05D006079 ORTHO05D008156 2.2e-203 712.2 394 89.3
AL4G34980 Arabidopsis lyrata HOM05D006079 ORTHO05D008156 1.1e-202 709.9 396 88.4
Carub.0004s1997 Capsella rubella HOM05D006079 ORTHO05D008156 5.5e-199 697.6 395 87.3
AT2G38000 Arabidopsis thaliana HOM05D006079 ORTHO05D008156 1.2e-198 696.4 398 87.7
CARHR132560 Cardamine hirsuta HOM05D006079 ORTHO05D008156 2.7e-198 695.3 394 87.1
Aa31LG5G23170 Aethionema arabicum HOM05D006079 ORTHO05D008156 4.4e-196 688.0 394 85.5
THA.LOC104823390 Tarenaya hassleriana HOM05D006079 ORTHO05D008156 3.0e-176 622.1 397 74.3
Manes.08G086700 Manihot esculenta HOM05D006079 ORTHO05D008156 2.4e-149 532.7 396 65.7
Gohir.A04G087500 Gossypium hirsutum HOM05D006079 ORTHO05D008156 4.0e-149 531.9 396 65.4
Gorai.012G110900 Gossypium raimondii HOM05D006079 ORTHO05D008156 6.9e-149 531.2 396 64.9
CiPaw.10G153700 Carya illinoinensis HOM05D006079 ORTHO05D008156 5.4e-146 521.5 397 61.7
Duzib093G0682 Durio zibethinus HOM05D006079 ORTHO05D008156 5.4e-146 521.5 399 63.4
Atru.chr8.2129 Acer truncatum HOM05D006079 ORTHO05D008156 7.1e-146 521.2 400 63.0
Nn2g13580 Nelumbo nucifera HOM05D006079 ORTHO05D008156 1.2e-145 520.4 398 62.8
CSS0045639 Camellia sinensis var. sinensis HOM05D006079 ORTHO05D008156 1.1e-143 513.8 401 61.8
Gohir.D04G127900 Gossypium hirsutum HOM05D006079 ORTHO05D008156 4.3e-143 511.9 396 63.4
Prupe.6G269000 Prunus persica HOM05D006079 ORTHO05D008156 4.3e-143 511.9 397 63.5
Cpa.g.sc56.97 Carica papaya HOM05D006079 ORTHO05D008156 1.6e-142 510.0 397 63.2
Eucgr.B02761 Eucalyptus grandis HOM05D006079 ORTHO05D008156 3.6e-142 508.8 397 64.5
TWI77G0608 Tripterygium wilfordii HOM05D006079 ORTHO05D008156 3.6e-142 508.8 396 62.6
Actinidia13795 Actinidia chinensis HOM05D006079 ORTHO05D008156 6.2e-142 508.1 398 62.1
Duzib128G0993 Durio zibethinus HOM05D006079 ORTHO05D008156 1.4e-141 506.9 399 61.9
Thecc.05G024000 Theobroma cacao HOM05D006079 ORTHO05D008156 4.0e-141 505.4 399 62.2
COL.COLO4_14632 Corchorus olitorius HOM05D006079 ORTHO05D008156 5.3e-141 505.0 399 61.4
Cfa017268 Carpinus fangiana HOM05D006079 ORTHO05D008156 1.2e-140 503.8 399 61.4
Glyma.07G143100 Glycine max HOM05D006079 ORTHO05D008156 3.4e-140 502.3 397 62.2
Psat3g135200 Pisum sativum HOM05D006079 ORTHO05D008156 5.8e-140 501.5 399 61.2
QL07p036333 Quercus lobata HOM05D006079 ORTHO05D008156 9.9e-140 500.7 399 61.4
CANSAT35G1087 Cannabis sativa HOM05D006079 ORTHO05D008156 1.3e-139 500.4 397 62.0
Lalb_Chr01g0022871 Lupinus albus HOM05D006079 ORTHO05D008156 1.7e-139 500.0 399 61.9
MD12G1158600 Malus domestica HOM05D006079 ORTHO05D008156 2.2e-139 499.6 397 62.2
Nitab4.5_0007539g0010 Nicotiana tabacum HOM05D006079 ORTHO05D008156 3.8e-139 498.8 400 61.5
PSO585G0039 Papaver somniferum HOM05D006079 ORTHO05D008156 3.8e-139 498.8 399 61.4
Nitab4.5_0000008g0510 Nicotiana tabacum HOM05D006079 ORTHO05D008156 6.4e-139 498.0 400 60.2
Dinv35521 Davidia involucrata HOM05D006079 ORTHO05D008156 1.9e-138 496.5 400 61.2
PGR031G3170 Punica granatum HOM05D006079 ORTHO05D008156 1.9e-138 496.5 403 62.3
Haze_20934 Corylus avellana HOM05D006079 ORTHO05D008156 2.4e-138 496.1 403 60.3
Sabra06G0073200 Salix brachista HOM05D006079 ORTHO05D008156 4.2e-138 495.4 400 62.0
Sed0002088 Sechium edule HOM05D006079 ORTHO05D008156 5.4e-138 495.0 389 62.7
Ca_09158_v3 Cicer arietinum L. HOM05D006079 ORTHO05D008156 9.3e-138 494.2 394 61.2
FAN14G2872 Fragaria x ananassa HOM05D006079 ORTHO05D008156 2.1e-137 493.0 397 62.0
FvH4_6g12250 Fragaria vesca HOM05D006079 ORTHO05D008156 2.7e-137 492.7 397 61.7
FAN02G2404 Fragaria x ananassa HOM05D006079 ORTHO05D008156 2.7e-137 492.7 397 61.7
Lj1g0026135 Lotus japonicus HOM05D006079 ORTHO05D008156 3.5e-137 492.3 403 59.8
ECA236G0495 Erigeron canadensis HOM05D006079 ORTHO05D008156 4.6e-137 491.9 409 58.9
Sc25g0003370 Simmondsia chinensis HOM05D006079 ORTHO05D008156 4.6e-137 491.9 397 61.5
Potri.006G095400 Populus trichocarpa HOM05D006079 ORTHO05D008156 6.0e-137 491.5 400 62.5
PSO384G3626 Papaver somniferum HOM05D006079 ORTHO05D008156 1.0e-136 490.7 399 61.4
CsaV3_4G025930 Cucumis sativus L. HOM05D006079 ORTHO05D008156 1.8e-136 490.0 394 62.4
Solyc09g011880.3 Solanum lycopersicum HOM05D006079 ORTHO05D008156 1.8e-136 490.0 399 60.2
Sopen09g006700 Solanum pennellii HOM05D006079 ORTHO05D008156 2.3e-136 489.6 399 59.9
FAN05G0163 Fragaria x ananassa HOM05D006079 ORTHO05D008156 3.9e-136 488.8 397 61.5
PGSC0003DMG400020333 Solanum tuberosum HOM05D006079 ORTHO05D008156 3.3e-135 485.7 401 59.4
MELO3C003219.2 Cucumis melo HOM05D006079 ORTHO05D008156 4.3e-135 485.3 394 61.4
FAN09G0680 Fragaria x ananassa HOM05D006079 ORTHO05D008156 4.3e-135 485.3 397 61.2
SGA_v2.0_scaffold85G26780 Striga asiatica HOM05D006079 ORTHO05D008156 4.3e-135 485.3 403 60.3
Ciclev10011790m.g Citrus clementina HOM05D006079 ORTHO05D008156 7.4e-135 484.6 397 60.7
RcHm_v2.0_Chr3g0464051 Rosa chinensis HOM05D006079 ORTHO05D008156 7.4e-135 484.6 402 60.4
Medtr7g066250 Medicago truncatula HOM05D006079 ORTHO05D008156 1.3e-134 483.8 398 59.3
AUR62041356 Chenopodium quinoa HOM05D006079 ORTHO05D008156 1.6e-134 483.4 390 61.5
ClCG04G007320 Citrullus lanatus HOM05D006079 ORTHO05D008156 1.6e-134 483.4 389 61.7
GSVIVG01034026001 Vitis vinifera HOM05D006079 ORTHO05D008156 1.6e-134 483.4 397 60.2
Peaxi162Scf01352g00015 Petunia axillaris HOM05D006079 ORTHO05D008156 2.1e-134 483.0 401 58.4
Migut.J00236 Erythranthe guttata HOM05D006079 ORTHO05D008156 6.2e-134 481.5 398 60.6
unitig_26.g9105 Utricularia gibba HOM05D006079 ORTHO05D008156 9.0e-133 477.6 397 60.2
HanXRQChr04g0124711 Helianthus annuus HOM05D006079 ORTHO05D008156 1.2e-132 477.2 404 58.2
Phvul.008G111400 Phaseolus vulgaris HOM05D006079 ORTHO05D008156 1.5e-132 476.9 398 59.0
TAR633G1690 Trochodendron aralioides HOM05D006079 ORTHO05D008156 7.6e-132 474.6 417 57.8
Aqoxy1G00752 Aquilegia oxysepala HOM05D006079 ORTHO05D008156 2.2e-131 473.0 401 59.4
Lj2A83T75 Lonicera japonica HOM05D006079 ORTHO05D008156 2.2e-131 473.0 376 61.7
Ah.11g045330 Amaranthus hybridus HOM05D006079 ORTHO05D008156 6.4e-131 471.5 401 57.6
arahy.Tifrunner.gnm1.ann1.3KU04F Arachis hypogaea HOM05D006079 ORTHO05D008156 1.4e-130 470.3 397 58.7
Oeu015011.1 Olea europaea HOM05D006079 ORTHO05D008156 4.2e-130 468.8 392 59.7
Rhsim05G0203500 Rhododendron simsii HOM05D006079 ORTHO05D008156 5.5e-130 468.4 326 67.2
MSTRG.5605 Avicennia marina HOM05D006079 ORTHO05D008156 7.1e-130 468.0 397 57.7
arahy.Tifrunner.gnm1.ann1.GZPT0A Arachis hypogaea HOM05D006079 ORTHO05D008156 5.1e-128 461.8 421 55.3
Cc06_g01790 Coffea canephora HOM05D006079 ORTHO05D008156 1.9e-127 459.9 405 57.0
Actinidia29142 Actinidia chinensis HOM05D006079 ORTHO05D008156 4.8e-126 455.3 403 57.3
MBI05_g36624_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 2.5e-122 443.0 310 65.8
ATR0618G129 Amborella trichopoda HOM05D006079 ORTHO05D008156 1.6e-121 440.3 391 58.1
EL10Ac5g11535 Beta vulgaris HOM05D006079 ORTHO05D008156 6.7e-120 434.9 399 56.9
VMungo1383G1007 Vigna mungo HOM05D006079 ORTHO05D008156 6.7e-120 434.9 368 59.5
HPP92_006654 Vanilla planifolia HOM05D006079 ORTHO05D008156 5.3e-117 425.2 404 51.0
Lsat_1_v5_gn_8_82341 Lactuca sativa HOM05D006079 ORTHO05D008156 1.0e-115 421.0 401 53.6
vmacro20226 Vaccinium macrocarpon HOM05D006079 ORTHO05D008156 3.8e-115 419.1 407 53.3
DCAR_024040 Daucus carota HOM05D006079 ORTHO05D008156 2.5e-114 416.4 424 51.4
Os05g0316200 Oryza sativa ssp. japonica HOM05D006079 ORTHO05D008156 2.5e-114 416.4 386 52.6
CDE04G0224 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 3.2e-114 416.0 393 54.7
Zm00001eb169630 Zea mays HOM05D006079 ORTHO05D008156 1.0e-112 411.0 387 53.2
BcaC02g11941 Brassica carinata HOM05D006079 ORTHO05D008156 7.7e-108 394.8 202 96.0
SEGI_08405 Sequoiadendron giganteum HOM05D006079 ORTHO05D008156 7.2e-106 388.3 309 61.2
Gohir.A13G086740 Gossypium hirsutum HOM05D006079 ORTHO05D008156 2.0e-103 380.2 395 51.1
Hma1.2p1_0763F.1_g214490 Hydrangea macrophylla HOM05D006079 ORTHO05D008156 9.4e-98 361.3 405 50.1
TPR.G29287 Trifolium pratense HOM05D006079 ORTHO05D008156 3.8e-91 339.3 248 64.5
AagrBONN_evm.TU.Sc2ySwM_117.3694 Anthoceros agrestis HOM05D006079 ORTHO05D008156 9.4e-90 334.7 309 51.5
CDE07G0746 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 3.7e-86 322.8 392 47.2
CAN.G338.65 Capsicum annuum HOM05D006079 ORTHO05D008156 1.3e-83 314.3 284 54.9
SMO172G0100 Selaginella moellendorffii HOM05D006079 ORTHO05D008156 2.3e-80 303.5 310 51.0
Mapoly0040s0094 Marchantia polymorpha HOM05D006079 ORTHO05D008156 6.8e-80 302.0 370 43.0
Migut.J00237 Erythranthe guttata HOM05D006079 ORTHO05D008156 4.1e-77 292.7 320 48.4
HPP92_006629 Vanilla planifolia HOM05D006079 ORTHO05D008156 1.7e-70 270.8 293 45.1
Pp3c16_16710 Physcomitrium patens HOM05D006079 ORTHO05D008156 3.5e-68 263.1 369 40.4
Gohir.D13G085200 Gossypium hirsutum HOM05D006079 ORTHO05D008156 8.0e-57 225.3 197 57.4
Thhalv10017300m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 8.9e-56 221.9 213 59.2
Lsat_1_v5_gn_5_162881 Lactuca sativa HOM05D006079 ORTHO05D008156 7.5e-47 192.2 135 60.0
Gohir.A01G178136 Gossypium hirsutum HOM05D006079 ORTHO05D008156 5.1e-43 179.5 167 52.7
CAN.G686.13 Capsicum annuum HOM05D006079 ORTHO05D008156 2.8e-41 173.7 111 73.0
MD04G1144700 Malus domestica HOM05D006079 ORTHO05D008156 2.5e-34 150.6 140 55.7
QL07p036284 Quercus lobata HOM05D006079 ORTHO05D338014 7.6e-31 139.0 96 63.5
TAR636G2503 Trochodendron aralioides HOM05D006079 ORTHO05D008156 2.7e-28 130.6 81 79.0
Cc02_g12960 Coffea canephora HOM05D006079 ORTHO05D008156 4.3e-26 123.2 134 52.2
Gorai.006G157700 Gossypium raimondii HOM05D006079 ORTHO05D008156 5.6e-26 122.9 124 53.2
Gohir.D09G137350 Gossypium hirsutum HOM05D006079 ORTHO05D008156 3.6e-25 120.2 124 52.4
MD04G1144600 Malus domestica HOM05D006079 ORTHO05D032748 1.1e-24 118.6 86 65.1
BraA05t21464Z Brassica rapa HOM05D006079 ORTHO05D032748 7.1e-21 105.9 92 57.6
BcaC04g24204 Brassica carinata HOM05D006079 ORTHO05D032748 2.0e-15 87.8 49 81.6
TPR.G34865 Trifolium pratense HOM05D006079 ORTHO05D008156 3.3e-10 70.5 110 44.5
BolC1t02105H Brassica oleracea HOM05D006079 ORTHO05D106577 2.2e-06 57.8 45 68.9


User provided reference genes

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