Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p09080 Brassica napus HOM05D004253 ORTHO05D005013 1.6e-200 702.6 357 100.0
C04p09070 Brassica napus HOM05D004253 ORTHO05D005013 4.2e-161 571.6 329 90.0
A05p07590 Brassica napus HOM05D004253 ORTHO05D005013 7.1e-161 570.9 329 89.7
BcaC02g11997 Brassica carinata HOM05D004253 ORTHO05D005013 6.6e-159 564.3 329 89.4
BolC4t22497H Brassica oleracea HOM05D004253 ORTHO05D005013 6.6e-159 564.3 329 89.4
BcaB02g09172 Brassica carinata HOM05D004253 ORTHO05D005013 8.1e-157 557.4 332 88.0
Sp4g20780 Schrenkiella parvula HOM05D004253 ORTHO05D005013 2.2e-146 522.7 331 84.3
BraA05t19726Z Brassica rapa HOM05D004253 ORTHO05D005013 2.7e-144 515.8 278 95.7
Thhalv10016525m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 1.3e-143 513.5 329 84.2
AT2G38460 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 1.0e-135 487.3 334 79.6
CARHR133140 Cardamine hirsuta HOM05D004253 ORTHO05D005013 1.1e-134 483.8 333 79.9
AL4G35730 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 3.7e-133 478.8 300 85.3
Carub.0004s2043 Capsella rubella HOM05D004253 ORTHO05D005013 1.5e-131 473.4 335 77.9
Aa31sc114G20 Aethionema arabicum HOM05D004253 ORTHO05D005013 1.1e-121 440.7 326 74.5
Carub.0006s0241 Capsella rubella HOM05D004253 ORTHO05D005013 2.2e-117 426.4 332 70.2
THA.LOC104806636 Tarenaya hassleriana HOM05D004253 ORTHO05D005013 2.4e-116 422.9 328 71.0
AT5G03570 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 1.9e-113 413.3 329 67.5
BraA03t09505Z Brassica rapa HOM05D004253 ORTHO05D005013 5.5e-113 411.8 324 68.8
CARHR209750 Cardamine hirsuta HOM05D004253 ORTHO05D005013 7.2e-113 411.4 334 68.6
Thhalv10013299m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 1.6e-112 410.2 311 70.4
Sp6g39180 Schrenkiella parvula HOM05D004253 ORTHO05D005013 2.7e-112 409.5 329 67.5
AL6G13070 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 6.1e-112 408.3 310 71.6
BolC3t12713H Brassica oleracea HOM05D004253 ORTHO05D005013 7.9e-112 407.9 300 72.3
BcaB01g05813 Brassica carinata HOM05D004253 ORTHO05D005013 2.3e-111 406.4 326 68.7
A03p01250 Brassica napus HOM05D004253 ORTHO05D005013 8.8e-111 404.4 318 68.9
C03p01610 Brassica napus HOM05D004253 ORTHO05D005013 2.0e-110 403.3 318 68.6
BcaB01g05801 Brassica carinata HOM05D004253 ORTHO05D005013 2.2e-109 399.8 318 67.9
FvH4_6g10490 Fragaria vesca HOM05D004253 ORTHO05D005013 1.0e-90 337.8 325 53.5
FAN14G5304 Fragaria x ananassa HOM05D004253 ORTHO05D005013 1.0e-90 337.8 329 53.2
Atru.chr8.2352 Acer truncatum HOM05D004253 ORTHO05D005013 2.2e-90 336.7 296 57.8
FAN05G3841 Fragaria x ananassa HOM05D004253 ORTHO05D005013 5.0e-90 335.5 325 53.5
FAN09G3783 Fragaria x ananassa HOM05D004253 ORTHO05D005013 1.5e-89 334.0 325 53.2
Ciclev10011564m.g Citrus clementina HOM05D004253 ORTHO05D005013 4.2e-89 332.4 293 59.0
FAN05G1507 Fragaria x ananassa HOM05D004253 ORTHO05D005013 4.2e-89 332.4 325 53.2
Lalb_Chr13g0291391 Lupinus albus HOM05D004253 ORTHO05D005013 9.5e-89 331.3 319 53.6
Thecc.05G005300 Theobroma cacao HOM05D004253 ORTHO05D005013 9.5e-89 331.3 321 55.8
COL.COLO4_17446 Corchorus olitorius HOM05D004253 ORTHO05D005013 8.0e-88 328.2 314 54.5
Thecc.05G005200 Theobroma cacao HOM05D004253 ORTHO05D005013 1.8e-87 327.0 312 55.8
Gohir.D01G161500 Gossypium hirsutum HOM05D004253 ORTHO05D005013 2.3e-87 326.6 311 57.2
Duzib093G0769 Durio zibethinus HOM05D004253 ORTHO05D005013 6.8e-87 325.1 307 55.7
arahy.Tifrunner.gnm1.ann1.E0KVE0 Arachis hypogaea HOM05D004253 ORTHO05D005013 8.8e-87 324.7 311 55.6
Potri.016G128600 Populus trichocarpa HOM05D004253 ORTHO05D005013 8.8e-87 324.7 318 55.3
GSVIVG01030252001 Vitis vinifera HOM05D004253 ORTHO05D005013 1.2e-86 324.3 301 54.5
Gorai.002G200200 Gossypium raimondii HOM05D004253 ORTHO05D005013 2.0e-86 323.6 311 56.9
Prupe.6G286200 Prunus persica HOM05D004253 ORTHO05D005013 2.0e-86 323.6 305 55.1
CiPaw.09G216200 Carya illinoinensis HOM05D004253 ORTHO05D005013 2.6e-86 323.2 320 54.1
CsaV3_4G026660 Cucumis sativus L. HOM05D004253 ORTHO05D005013 5.7e-86 322.0 311 54.3
RcHm_v2.0_Chr6g0247161 Rosa chinensis HOM05D004253 ORTHO05D005013 5.7e-86 322.0 321 52.0
Sabra16G0129900 Salix brachista HOM05D004253 ORTHO05D005013 5.7e-86 322.0 298 57.4
Gohir.A01G170500 Gossypium hirsutum HOM05D004253 ORTHO05D005013 7.5e-86 321.6 311 56.3
GSVIVG01030250001 Vitis vinifera HOM05D004253 ORTHO05D005013 1.7e-85 320.5 293 54.9
arahy.Tifrunner.gnm1.ann1.ASGW3G Arachis hypogaea HOM05D004253 ORTHO05D005013 2.8e-85 319.7 315 54.6
CAN.G955.1 Capsicum annuum HOM05D004253 ORTHO05D005013 1.1e-84 317.8 306 53.3
MD12G1181400 Malus domestica HOM05D004253 ORTHO05D005013 1.1e-84 317.8 312 54.8
Phvul.010G062200 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 1.1e-84 317.8 299 55.9
Psat7g249920 Pisum sativum HOM05D004253 ORTHO05D005013 1.4e-84 317.4 317 53.0
Manes.09G113000 Manihot esculenta HOM05D004253 ORTHO05D005013 1.8e-84 317.0 293 57.0
Lj3g0025170 Lotus japonicus HOM05D004253 ORTHO05D005013 3.1e-84 316.2 292 55.8
CSS0015068 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 5.4e-84 315.5 302 52.6
Lj3g0011406 Lotus japonicus HOM05D004253 ORTHO05D005013 5.4e-84 315.5 307 54.1
Nn2g13286 Nelumbo nucifera HOM05D004253 ORTHO05D005013 5.4e-84 315.5 298 55.4
Nn5g27904 Nelumbo nucifera HOM05D004253 ORTHO05D005013 5.4e-84 315.5 306 52.6
VMungo0331G0711 Vigna mungo HOM05D004253 ORTHO05D005013 5.4e-84 315.5 294 55.8
Lj3g0027471 Lotus japonicus HOM05D004253 ORTHO05D005013 7.0e-84 315.1 308 55.2
COL.COLO4_14437 Corchorus olitorius HOM05D004253 ORTHO05D005013 9.2e-84 314.7 298 54.7
Eucgr.A00634 Eucalyptus grandis HOM05D004253 ORTHO05D005013 9.2e-84 314.7 306 53.9
Rhsim05G0226800 Rhododendron simsii HOM05D004253 ORTHO05D005013 9.2e-84 314.7 329 49.8
TWI53G0484 Tripterygium wilfordii HOM05D004253 ORTHO05D005013 9.2e-84 314.7 301 54.8
Sed0023395 Sechium edule HOM05D004253 ORTHO05D005013 1.6e-83 313.9 308 51.9
CSS0016892 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 5.9e-83 312.0 295 54.2
TPR.G5208 Trifolium pratense HOM05D004253 ORTHO05D005013 1.0e-82 311.2 295 55.3
Duzib177G0173 Durio zibethinus HOM05D004253 ORTHO05D005013 1.7e-82 310.5 300 54.7
Sed0018512 Sechium edule HOM05D004253 ORTHO05D005013 2.9e-82 309.7 306 53.9
Eucgr.A00635 Eucalyptus grandis HOM05D004253 ORTHO05D005013 3.8e-82 309.3 326 50.6
VMungo0331G0982 Vigna mungo HOM05D004253 ORTHO05D005013 5.0e-82 308.9 292 55.5
PGSC0003DMG400011865 Solanum tuberosum HOM05D004253 ORTHO05D005013 6.6e-82 308.5 306 52.6
Haze_21100 Corylus avellana HOM05D004253 ORTHO05D005013 1.1e-81 307.8 318 53.1
Medtr4g013240 Medicago truncatula HOM05D004253 ORTHO05D005013 1.1e-81 307.8 297 55.6
Nitab4.5_0012987g0010 Nicotiana tabacum HOM05D004253 ORTHO05D005013 1.9e-81 307.0 315 53.0
Sopen10g027900 Solanum pennellii HOM05D004253 ORTHO05D005013 1.9e-81 307.0 306 51.6
MSTRG.18968 Avicennia marina HOM05D004253 ORTHO05D005013 2.5e-81 306.6 308 51.0
FAN02G2747 Fragaria x ananassa HOM05D004253 ORTHO05D005013 2.5e-81 306.6 326 51.5
Solyc10g076280.3 Solanum lycopersicum HOM05D004253 ORTHO05D005013 3.3e-81 306.2 306 51.6
QL07p033645 Quercus lobata HOM05D004253 ORTHO05D005013 9.5e-81 304.7 296 55.4
TAR633G0963 Trochodendron aralioides HOM05D004253 ORTHO05D005013 9.5e-81 304.7 294 55.1
Eucgr.A00629 Eucalyptus grandis HOM05D004253 ORTHO05D005013 2.8e-80 303.1 290 53.4
Manes.09G113100 Manihot esculenta HOM05D004253 ORTHO05D005013 2.8e-80 303.1 318 53.1
RcHm_v2.0_Chr3g0461451 Rosa chinensis HOM05D004253 ORTHO05D005013 3.6e-80 302.8 283 56.2
Hma1.2p1_0501F.1_g167250 Hydrangea macrophylla HOM05D004253 ORTHO05D005013 4.7e-80 302.4 304 53.0
MBI15_g03641_MAGBIO Magnolia biondii HOM05D004253 ORTHO05D005013 6.1e-80 302.0 323 52.0
Oeu026968.1 Olea europaea HOM05D004253 ORTHO05D005013 1.4e-79 300.8 305 48.5
Cc06_g00690 Coffea canephora HOM05D004253 ORTHO05D005013 3.0e-79 299.7 316 49.7
Cfa017100 Carpinus fangiana HOM05D004253 ORTHO05D005013 4.0e-79 299.3 312 51.9
Migut.J00086 Erythranthe guttata HOM05D004253 ORTHO05D005013 4.0e-79 299.3 330 46.7
Glyma.01G128300 Glycine max HOM05D004253 ORTHO05D005013 5.2e-79 298.9 278 56.1
Glyma.03G042400 Glycine max HOM05D004253 ORTHO05D005013 9.8e-78 294.7 278 55.0
Eucgr.A00632 Eucalyptus grandis HOM05D004253 ORTHO05D005013 1.7e-77 293.9 290 52.4
Sc02g0000650 Simmondsia chinensis HOM05D004253 ORTHO05D005013 2.2e-77 293.5 311 52.4
Potri.016G128500 Populus trichocarpa HOM05D004253 ORTHO05D005013 2.9e-77 293.1 281 56.2
ClCG04G006590 Citrullus lanatus HOM05D004253 ORTHO05D005013 8.3e-77 291.6 314 50.3
Nitab4.5_0000355g0170 Nicotiana tabacum HOM05D004253 ORTHO05D005013 1.4e-76 290.8 315 51.1
HanXRQChr15g0463391 Helianthus annuus HOM05D004253 ORTHO05D005013 1.8e-76 290.4 324 48.1
PSO349G0244 Papaver somniferum HOM05D004253 ORTHO05D005013 2.4e-76 290.0 310 49.4
CANSAT35G1695 Cannabis sativa HOM05D004253 ORTHO05D005013 5.4e-76 288.9 295 53.9
Aa31LG1G21620 Aethionema arabicum HOM05D004253 ORTHO05D005013 7.0e-76 288.5 268 61.6
DCAR_023991 Daucus carota HOM05D004253 ORTHO05D005013 1.2e-75 287.7 317 46.7
ECA247G0592 Erigeron canadensis HOM05D004253 ORTHO05D005013 1.3e-74 284.3 307 49.8
Aqoxy4G02184 Aquilegia oxysepala HOM05D004253 ORTHO05D005013 3.0e-74 283.1 298 49.0
Medtr4g013245 Medicago truncatula HOM05D004253 ORTHO05D005013 6.6e-74 282.0 283 55.1
Phvul.010G062300 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 2.5e-73 280.0 278 54.0
TWI74G0689 Tripterygium wilfordii HOM05D004253 ORTHO05D005013 3.6e-72 276.2 272 54.0
Ca_27544_v3 Cicer arietinum L. HOM05D004253 ORTHO05D005013 8.0e-72 275.0 276 55.4
Zm00001eb384340 Zea mays HOM05D004253 ORTHO05D005013 8.0e-72 275.0 308 49.0
Hund19850 Selenicereus undatus HOM05D004253 ORTHO05D005013 1.0e-71 274.6 320 49.4
HPP92_012007 Vanilla planifolia HOM05D004253 ORTHO05D005013 1.8e-71 273.9 290 49.0
AUR62006302 Chenopodium quinoa HOM05D004253 ORTHO05D005013 6.8e-71 271.9 316 49.4
HPP92_012012 Vanilla planifolia HOM05D004253 ORTHO05D005013 1.2e-70 271.2 292 49.0
PGR031G1936 Punica granatum HOM05D004253 ORTHO05D005013 3.4e-70 269.6 285 50.5
vmacro20334 Vaccinium macrocarpon HOM05D004253 ORTHO05D005013 9.8e-70 268.1 370 42.4
AUR62026347 Chenopodium quinoa HOM05D004253 ORTHO05D005013 2.2e-69 266.9 299 49.8
PSO017G1341 Papaver somniferum HOM05D004253 ORTHO05D005013 4.9e-69 265.8 303 45.2
Peaxi162Scf00264g00861 Petunia axillaris HOM05D004253 ORTHO05D005013 1.1e-68 264.6 309 47.9
unitig_8.g4466 Utricularia gibba HOM05D004253 ORTHO05D005013 7.0e-68 261.9 293 47.4
Cc00_g33920 Coffea canephora HOM05D004253 ORTHO05D005013 3.5e-67 259.6 270 48.9
SalBow5G5570 Salvia bowleyana HOM05D004253 ORTHO05D005013 7.8e-67 258.5 280 47.9
SGA_v2.0_scaffold85G26671 Striga asiatica HOM05D004253 ORTHO05D005013 1.3e-66 257.7 278 48.2
PSO349G0271 Papaver somniferum HOM05D004253 ORTHO05D005013 4.7e-64 249.2 282 44.7
Os06g0560000 Oryza sativa ssp. japonica HOM05D004253 ORTHO05D005013 2.0e-62 243.8 291 47.8
SEGI_29225 Sequoiadendron giganteum HOM05D004253 ORTHO05D005013 2.6e-62 243.4 298 46.0
CDE04G3038 Ceratophyllum demersum HOM05D004253 ORTHO05D005013 5.8e-62 242.3 276 46.7
ATR0594G059 Amborella trichopoda HOM05D004253 ORTHO05D005013 2.9e-61 240.0 287 46.0
EL10Ac7g17016 Beta vulgaris HOM05D004253 ORTHO05D005013 1.1e-60 238.0 276 48.9
Eucgr.A00630 Eucalyptus grandis HOM05D004253 ORTHO05D005013 4.1e-60 236.1 304 45.1
Lj3C944T3 Lonicera japonica HOM05D004253 ORTHO05D005013 7.1e-60 235.3 204 56.4
RcHm_v2.0_Chr3g0461441 Rosa chinensis HOM05D004253 ORTHO05D005013 1.6e-59 234.2 237 54.0
CiPaw.09G216400 Carya illinoinensis HOM05D004253 ORTHO05D005013 4.0e-55 219.5 231 52.8
Mapoly0049s0027 Marchantia polymorpha HOM05D004253 ORTHO05D005013 2.1e-51 207.2 311 38.6
Pp3c20_5190 Physcomitrium patens HOM05D004253 ORTHO05D005013 2.8e-48 196.8 328 37.2
AagrBONN_evm.TU.Sc2ySwM_344.1348 Anthoceros agrestis HOM05D004253 ORTHO05D005013 3.6e-48 196.4 296 38.9
Actinidia29061 Actinidia chinensis HOM05D004253 ORTHO05D005013 1.1e-47 194.9 216 47.7
MELO3C026034.2 Cucumis melo HOM05D004253 ORTHO05D005013 8.4e-45 185.3 332 38.0
Zm00001eb384360 Zea mays HOM05D004253 ORTHO05D005013 1.4e-44 184.5 251 42.2
HanXRQChr10g0287851 Helianthus annuus HOM05D004253 ORTHO05D005013 5.4e-44 182.6 168 54.2
SMO115G0243 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 6.2e-40 169.1 304 37.2
CBR_g42062 Chara braunii HOM05D004253 ORTHO05D005013 2.4e-36 157.1 210 41.9
Dinv25280 Davidia involucrata HOM05D004253 ORTHO05D005013 3.4e-30 136.7 163 47.2
SMO118G0042 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 2.1e-24 117.5 324 29.0
BolC4t22513H Brassica oleracea HOM05D004253 ORTHO05D005013 2.8e-24 117.1 70 82.9
Lsat_1_v5_gn_9_37021 Lactuca sativa HOM05D004253 ORTHO05D005013 2.6e-22 110.5 157 43.3
RcHm_v2.0_Chr3g0461431 Rosa chinensis HOM05D004253 ORTHO05D005013 2.5e-20 104.0 99 54.5
EL10Ac7g16784 Beta vulgaris HOM05D004253 ORTHO05D005013 2.1e-19 100.9 157 40.8
EL10As8g23831 Beta vulgaris HOM05D004253 ORTHO05D005013 2.1e-19 100.9 157 40.8
MSTRG.18966 Avicennia marina HOM05D004253 ORTHO05D005013 6.9e-15 85.9 124 41.9
Cfa024502 Carpinus fangiana HOM05D004253 ORTHO05D005013 6.5e-13 79.3 197 26.9
HanXRQChr10g0287841 Helianthus annuus HOM05D004253 ORTHO05D005013 3.2e-12 77.0 116 37.9
Cpa.g.sc5.254 Carica papaya HOM05D004253 ORTHO05D005013 1.3e-08 65.1 41 65.9


User provided reference genes

Program Settings