Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 1.4e-38 162.5 86 100.0
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 4.1e-38 161.0 86 98.8
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 4.1e-38 161.0 86 98.8
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 4.5e-37 157.5 86 96.5
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 5.9e-37 157.1 86 96.5
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 5.5e-35 150.6 86 95.3
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 3.9e-33 144.4 86 91.9
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 1.3e-31 139.4 86 89.5
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 8.2e-31 136.7 86 88.4
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 8.2e-31 136.7 86 83.7
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 1.4e-30 136.0 86 86.0
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 2.4e-30 135.2 86 84.9
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 3.8e-28 127.9 84 81.0
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 4.2e-27 124.4 71 91.5
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 4.2e-27 124.4 71 90.1
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 4.2e-27 124.4 86 83.7
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 3.0e-25 118.2 71 83.1
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 1.3e-23 112.8 71 83.1
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 3.0e-17 91.7 71 66.2
BcaC02g07465 Brassica carinata HOM05D007802 ORTHO05D009879 8.8e-17 90.1 81 63.0
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 4.4e-16 87.8 81 59.3
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 2.8e-15 85.1 79 57.0
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 1.8e-14 82.4 69 60.9
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 3.1e-14 81.6 82 53.7
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 4.1e-14 81.3 79 57.0
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 4.1e-14 81.3 79 57.0
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 5.4e-14 80.9 74 54.1
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 9.1e-14 80.1 73 56.2
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 2.0e-13 79.0 87 52.9
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 4.5e-13 77.8 82 51.2
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 4.5e-13 77.8 66 59.1
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 7.7e-13 77.0 81 54.3
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 7.7e-13 77.0 70 55.7
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 1.0e-12 76.6 73 53.4
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 1.0e-12 76.6 87 54.0
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 1.3e-12 76.3 92 48.9
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 1.7e-12 75.9 66 57.6
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 1.7e-12 75.9 81 51.9
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 2.9e-12 75.1 73 53.4
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 2.9e-12 75.1 71 53.5
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 2.9e-12 75.1 73 57.5
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 2.9e-12 75.1 79 50.6
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 5.0e-12 74.3 88 51.1
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 5.0e-12 74.3 71 56.3
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 5.0e-12 74.3 82 52.4
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 6.6e-12 73.9 71 53.5
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 6.6e-12 73.9 78 50.0
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 6.6e-12 73.9 68 55.9
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 8.6e-12 73.6 76 55.3
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 1.9e-11 72.4 83 45.8
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.9e-11 72.4 67 56.7
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 3.3e-11 71.6 74 55.4
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 4.2e-11 71.2 87 47.1
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 4.2e-11 71.2 67 56.7
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 4.2e-11 71.2 69 53.6
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 5.5e-11 70.9 67 56.7
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 9.5e-11 70.1 91 48.4
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 2.1e-10 68.9 71 52.1
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 2.1e-10 68.9 78 50.0
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 2.8e-10 68.6 73 49.3
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 3.6e-10 68.2 83 44.6
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.6e-10 68.2 111 40.5
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.6e-10 68.2 111 40.5
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 6.1e-10 67.4 83 44.6
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 6.1e-10 67.4 83 44.6
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 6.1e-10 67.4 67 55.2
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 1.0e-09 66.6 65 55.4
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 1.0e-09 66.6 80 46.2
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 3.0e-09 65.1 71 46.5
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 4.0e-09 64.7 72 47.2
BraA04t18408Z Brassica rapa HOM05D002861 ORTHO05D003104 5.2e-09 64.3 46 78.3
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 2.0e-08 62.4 74 51.4
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 2.0e-08 62.4 73 46.6
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 2.0e-08 62.4 77 42.9
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 3.4e-08 61.6 76 43.4
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 4.4e-08 61.2 67 47.8
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 5.7e-08 60.8 70 45.7
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 5.7e-08 60.8 63 50.8
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 1.3e-07 59.7 72 44.4
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 2.8e-07 58.5 44 63.6
SEGI_16653 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 1.1e-06 56.6 70 45.7
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 1.4e-06 56.2 66 45.5
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 3.1e-06 55.1 66 45.5


User provided reference genes

Program Settings