Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p08830 Brassica napus HOM05D002403 ORTHO05D002724 3.9e-23 110.5 53 100.0
BcaC02g12026 Brassica carinata HOM05D002403 ORTHO05D002724 4.3e-22 107.1 53 94.3
A10p33350 Brassica napus HOM05D002403 ORTHO05D002724 1.5e-19 98.6 52 88.5
BraA10t45366Z Brassica rapa HOM05D002403 ORTHO05D002724 1.5e-19 98.6 52 88.5
C09p74260 Brassica napus HOM05D002403 ORTHO05D002724 3.4e-19 97.4 52 86.5
BolC9t60159H Brassica oleracea HOM05D002403 ORTHO05D002724 5.8e-19 96.7 52 86.5
AL6G11530 Arabidopsis lyrata HOM05D002403 ORTHO05D002724 1.3e-18 95.5 52 84.6
AT5G02270 Arabidopsis thaliana HOM05D002403 ORTHO05D002724 1.3e-18 95.5 52 84.6
Carub.0006s0111 Capsella rubella HOM05D002403 ORTHO05D002724 2.9e-18 94.4 52 84.6
CARHR211100 Cardamine hirsuta HOM05D002403 ORTHO05D002724 3.8e-18 94.0 52 82.7
Thhalv10014095m.g Eutrema salsugineum HOM05D002403 ORTHO05D002724 8.4e-18 92.8 52 82.7
Sp6g40180 Schrenkiella parvula HOM05D002403 ORTHO05D002724 8.4e-18 92.8 52 82.7
BraA03t09450Z Brassica rapa HOM05D002403 ORTHO05D002724 1.1e-17 92.4 52 82.7
Aa31LG1G22480 Aethionema arabicum HOM05D002403 ORTHO05D002724 2.4e-17 91.3 52 80.8
A03p00600 Brassica napus HOM05D002403 ORTHO05D002724 5.4e-17 90.1 52 78.8
BcaB01g06155 Brassica carinata HOM05D002403 ORTHO05D002724 2.3e-15 84.7 52 78.8
BcaNung07063 Brassica carinata HOM05D002403 ORTHO05D002724 2.3e-15 84.7 52 78.8
BcaB01g06220 Brassica carinata HOM05D002403 ORTHO05D002724 4.3e-14 80.5 43 83.7
Migut.B00855 Erythranthe guttata HOM05D002403 ORTHO05D002724 1.3e-13 79.0 52 75.0
TWI77G1018 Tripterygium wilfordii HOM05D002403 ORTHO05D002724 1.3e-13 79.0 55 70.9
Sed0015312 Sechium edule HOM05D002403 ORTHO05D002724 3.7e-13 77.4 55 69.1
ClCG01G010800 Citrullus lanatus HOM05D002403 ORTHO05D002724 4.8e-13 77.0 55 67.3
MELO3C025524.2 Cucumis melo HOM05D002403 ORTHO05D002724 4.8e-13 77.0 55 67.3
CsaV3_1G015760 Cucumis sativus L. HOM05D002403 ORTHO05D002724 4.8e-13 77.0 55 67.3
QL03p017774 Quercus lobata HOM05D002403 ORTHO05D002724 6.2e-13 76.6 55 70.9
TWI53G0157 Tripterygium wilfordii HOM05D002403 ORTHO05D002724 6.2e-13 76.6 55 69.1
Glyma.10G145200 Glycine max HOM05D002403 ORTHO05D002724 1.1e-12 75.9 55 69.1
Lju99C10T11 Lonicera japonica HOM05D002403 ORTHO05D002724 1.1e-12 75.9 51 66.7
HanXRQChr17g0550561 Helianthus annuus HOM05D002403 ORTHO05D002724 1.8e-12 75.1 51 64.7
DCAR_001898 Daucus carota HOM05D002403 ORTHO05D002724 2.4e-12 74.7 51 66.7
Gohir.D11G345900 Gossypium hirsutum HOM05D002403 ORTHO05D002724 2.4e-12 74.7 55 69.1
Gorai.007G376200 Gossypium raimondii HOM05D002403 ORTHO05D002724 2.4e-12 74.7 55 69.1
COL.COLO4_14790 Corchorus olitorius HOM05D002403 ORTHO05D002724 3.1e-12 74.3 55 67.3
Potri.003G155800 Populus trichocarpa HOM05D002403 ORTHO05D002724 3.1e-12 74.3 56 69.6
Potri.006G086000 Populus trichocarpa HOM05D002403 ORTHO05D002724 3.1e-12 74.3 56 69.6
ATR0693G037 Amborella trichopoda HOM05D002403 ORTHO05D002724 6.9e-12 73.2 56 66.1
CSS0018724 Camellia sinensis var. sinensis HOM05D002403 ORTHO05D002724 6.9e-12 73.2 55 69.1
CSS0029925 Camellia sinensis var. sinensis HOM05D002403 ORTHO05D002724 6.9e-12 73.2 55 69.1
Gohir.A11G327000 Gossypium hirsutum HOM05D002403 ORTHO05D002724 6.9e-12 73.2 55 67.3
Manes.08G080200 Manihot esculenta HOM05D002403 ORTHO05D002724 6.9e-12 73.2 55 67.3
Thecc.05G038800 Theobroma cacao HOM05D002403 ORTHO05D002724 6.9e-12 73.2 55 65.5
Actinidia01670 Actinidia chinensis HOM05D002403 ORTHO05D002724 9.0e-12 72.8 55 67.3
MSTRG.27921 Avicennia marina HOM05D002403 ORTHO05D002724 9.0e-12 72.8 56 67.9
HPP92_012778 Vanilla planifolia HOM05D002403 ORTHO05D002724 9.0e-12 72.8 51 66.7
ECA246G1410 Erigeron canadensis HOM05D002403 ORTHO05D002724 1.2e-11 72.4 51 60.8
Sabra06G0065600 Salix brachista HOM05D002403 ORTHO05D002724 1.2e-11 72.4 56 67.9
arahy.Tifrunner.gnm1.ann1.B4GIY0 Arachis hypogaea HOM05D002403 ORTHO05D002724 2.0e-11 71.6 55 65.5
arahy.Tifrunner.gnm1.ann1.THA6J1 Arachis hypogaea HOM05D002403 ORTHO05D002724 2.6e-11 71.2 55 63.6
GSVIVG01031286001 Vitis vinifera HOM05D002403 ORTHO05D002724 2.6e-11 71.2 56 66.1
Duzib093G2011 Durio zibethinus HOM05D002403 ORTHO05D002724 3.4e-11 70.9 55 61.8
Duzib106G1472 Durio zibethinus HOM05D002403 ORTHO05D002724 3.4e-11 70.9 55 65.5
vmacro19773 Vaccinium macrocarpon HOM05D002403 ORTHO05D002724 3.4e-11 70.9 56 67.9
EL10Ac4g09511 Beta vulgaris HOM05D002403 ORTHO05D002724 4.5e-11 70.5 55 63.6
Cc02_g35400 Coffea canephora HOM05D002403 ORTHO05D002724 4.5e-11 70.5 56 62.5
PGR031G0862 Punica granatum HOM05D002403 ORTHO05D002724 4.5e-11 70.5 55 67.3
VMungo0720G0820 Vigna mungo HOM05D002403 ORTHO05D002724 4.5e-11 70.5 55 63.6
Nitab4.5_0003044g0090 Nicotiana tabacum HOM05D002403 ORTHO05D002724 5.8e-11 70.1 56 67.9
Nitab4.5_0011298g0010 Nicotiana tabacum HOM05D002403 ORTHO05D002724 5.8e-11 70.1 56 67.9
Ciclev10012095m.g Citrus clementina HOM05D002403 ORTHO05D002724 7.6e-11 69.7 56 62.5
CiPaw.08G153200 Carya illinoinensis HOM05D002403 ORTHO05D002724 9.9e-11 69.3 55 61.8
Phvul.007G203500 Phaseolus vulgaris HOM05D002403 ORTHO05D002724 9.9e-11 69.3 55 63.6
Hund21853 Selenicereus undatus HOM05D002403 ORTHO05D002724 9.9e-11 69.3 55 61.8
Aqoxy5G02737 Aquilegia oxysepala HOM05D002403 ORTHO05D002724 2.2e-10 68.2 55 63.6
CANSAT54G0224 Cannabis sativa HOM05D002403 ORTHO05D002724 2.2e-10 68.2 51 64.7
Glyma.20G094300 Glycine max HOM05D002403 ORTHO05D002724 2.9e-10 67.8 55 63.6
Psat6g153720 Pisum sativum HOM05D002403 ORTHO05D002724 2.9e-10 67.8 57 64.9
Rhsim05G0130100 Rhododendron simsii HOM05D002403 ORTHO05D002724 3.8e-10 67.4 55 63.6
TPR.G2594 Trifolium pratense HOM05D002403 ORTHO05D002724 4.9e-10 67.0 56 64.3
Zm00001eb395610 Zea mays HOM05D002403 ORTHO05D002724 4.9e-10 67.0 55 63.6
Hma1.2p1_1553F.1_g290230 Hydrangea macrophylla HOM05D002403 ORTHO05D002724 6.4e-10 66.6 56 64.3
THA.LOC104827018 Tarenaya hassleriana HOM05D002403 ORTHO05D002724 6.4e-10 66.6 55 58.2
Cpa.g.sc260.7 Carica papaya HOM05D002403 ORTHO05D002724 8.4e-10 66.2 52 65.4
Lj5g0016202 Lotus japonicus HOM05D002403 ORTHO05D002724 8.4e-10 66.2 57 64.9
Peaxi162Scf00357g00622 Petunia axillaris HOM05D002403 ORTHO05D002724 8.4e-10 66.2 57 66.7
CDE08G0549 Ceratophyllum demersum HOM05D002403 ORTHO05D002724 1.1e-09 65.9 55 60.0
Ca_10188_v3 Cicer arietinum L. HOM05D000897 ORTHO05D000716 1.1e-09 65.9 57 63.2
MBI19_g32694_MAGBIO Magnolia biondii HOM05D002403 ORTHO05D002724 1.4e-09 65.5 55 60.0
Oeu053744.1 Olea europaea HOM05D002403 ORTHO05D002724 1.4e-09 65.5 56 64.3
Eucgr.H01294 Eucalyptus grandis HOM05D002403 ORTHO05D002724 1.9e-09 65.1 55 61.8
Medtr1g084720 Medicago truncatula HOM05D002403 ORTHO05D002724 1.9e-09 65.1 56 58.9
Ah.06g196250 Amaranthus hybridus HOM05D002403 ORTHO05D002724 2.4e-09 64.7 55 58.2
CDE02G1988 Ceratophyllum demersum HOM05D002403 ORTHO05D002724 2.4e-09 64.7 56 55.4
Os03g0316900 Oryza sativa ssp. japonica HOM05D002403 ORTHO05D002724 2.4e-09 64.7 52 61.5
Atru.chr8.1982 Acer truncatum HOM05D002403 ORTHO05D002724 3.2e-09 64.3 56 62.5
Cfa006730 Carpinus fangiana HOM05D002403 ORTHO05D002724 3.2e-09 64.3 55 58.2
Nn3g21835 Nelumbo nucifera HOM05D002403 ORTHO05D002724 3.2e-09 64.3 55 58.2
Actinidia01493 Actinidia chinensis HOM05D002403 ORTHO05D002724 5.5e-09 63.5 50 62.0
Haze_04030 Corylus avellana HOM05D002403 ORTHO05D002724 7.1e-09 63.2 55 58.2
PSO724G0808 Papaver somniferum HOM05D002403 ORTHO05D002724 2.1e-08 61.6 56 60.7
PSO729G0056 Papaver somniferum HOM05D002403 ORTHO05D002724 2.1e-08 61.6 56 60.7
CAN.G1076.47 Capsicum annuum HOM05D002403 ORTHO05D002724 2.7e-08 61.2 57 61.4
Solyc01g100850.3 Solanum lycopersicum HOM05D002403 ORTHO05D002724 2.7e-08 61.2 57 61.4
Sopen01g044350 Solanum pennellii HOM05D002403 ORTHO05D002724 2.7e-08 61.2 57 61.4
PGSC0003DMG400002789 Solanum tuberosum HOM05D002403 ORTHO05D002724 2.7e-08 61.2 57 61.4
RhsimUnG0037800 Rhododendron simsii HOM05D002403 ORTHO05D002724 3.5e-08 60.8 55 58.2
SalBow3G1703 Salvia bowleyana HOM05D002403 ORTHO05D002724 3.5e-08 60.8 52 63.5
FAN02G2552 Fragaria x ananassa HOM05D002403 ORTHO05D002724 6.0e-08 60.1 52 59.6
SMO118G0322 Selaginella moellendorffii HOM05D002403 ORTHO05D002724 6.0e-08 60.1 53 56.6
FvH4_6g08040 Fragaria vesca HOM05D002403 ORTHO05D002724 7.9e-08 59.7 51 58.8
FAN09G3356 Fragaria x ananassa HOM05D002403 ORTHO05D002724 7.9e-08 59.7 51 58.8
FAN14G3133 Fragaria x ananassa HOM05D002403 ORTHO05D002724 7.9e-08 59.7 51 58.8
FAN05G4162 Fragaria x ananassa HOM05D002403 ORTHO05D002724 1.0e-07 59.3 51 58.8
Migut.N00957 Erythranthe guttata HOM05D002403 ORTHO05D002724 1.3e-07 58.9 52 59.6
Rhsim01G0130300 Rhododendron simsii HOM05D002403 ORTHO05D002724 1.3e-07 58.9 55 56.4
HanXRQChr10g0302411 Helianthus annuus HOM05D002403 ORTHO05D002724 2.3e-07 58.2 36 66.7
Prupe.6G308800 Prunus persica HOM05D002403 ORTHO05D002724 3.0e-07 57.8 51 62.7
Mapoly0016s0142 Marchantia polymorpha HOM05D002403 ORTHO05D002724 3.9e-07 57.4 58 60.3
RcHm_v2.0_Chr3g0457711 Rosa chinensis HOM05D002403 ORTHO05D002724 8.7e-07 56.2 51 54.9
Lalb_Chr06g0167391 Lupinus albus HOM05D002403 ORTHO05D002724 1.1e-06 55.8 51 58.8
MD12G1203100 Malus domestica HOM05D002403 ORTHO05D002724 1.1e-06 55.8 51 62.7
unitig_32.g11535 Utricularia gibba HOM05D002403 ORTHO05D002724 1.5e-06 55.5 48 60.4
SGA_v2.0_scaffold87G26965 Striga asiatica HOM05D002403 ORTHO05D002724 2.5e-06 54.7 49 55.1
SGA_v2.0_scaffold87G26959 Striga asiatica HOM05D002403 ORTHO05D051392 4.3e-06 53.9 33 72.7
Hma1.2p1_0726F.1_g208950 Hydrangea macrophylla HOM05D002403 ORTHO05D002724 5.6e-06 53.5 56 55.4
SGA_v2.0_scaffold4G01983 Striga asiatica HOM05D002403 ORTHO05D002724 7.4e-06 53.1 34 73.5


User provided reference genes

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