Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 6.5e-196 687.2 344 100.0
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 1.1e-182 643.3 344 94.8
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 6.8e-177 624.0 331 95.2
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 2.5e-171 605.5 344 91.0
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 8.0e-170 600.5 344 91.0
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 3.7e-167 591.7 357 87.1
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 2.1e-162 575.9 357 84.3
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 2.9e-159 565.5 370 80.3
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 7.1e-158 560.8 371 80.1
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.0e-156 557.0 361 82.3
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.6e-154 549.7 357 81.2
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 1.7e-151 539.7 357 80.7
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 3.6e-146 521.9 357 77.3
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 4.9e-143 511.5 361 75.9
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 3.4e-136 488.8 299 81.6
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 7.4e-131 471.1 362 70.7
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.8e-129 466.5 362 68.5
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 5.3e-113 411.8 359 62.1
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 6.1e-109 398.3 292 66.8
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 8.8e-108 394.4 299 66.2
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 1.5e-107 393.7 288 66.3
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.5e-107 392.9 292 66.8
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 4.3e-107 392.1 358 57.3
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 5.7e-107 391.7 291 65.3
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 7.4e-107 391.3 316 63.6
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 9.7e-107 391.0 358 59.2
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 9.7e-107 391.0 357 59.4
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.3e-106 390.6 357 59.1
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 2.8e-106 389.4 362 57.7
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.8e-106 389.4 293 66.9
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 6.3e-106 388.3 355 57.5
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.4e-105 387.1 288 66.0
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 3.1e-105 386.0 317 63.4
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 3.1e-105 386.0 327 61.5
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 4.1e-105 385.6 355 57.2
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 5.3e-105 385.2 359 57.4
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 6.9e-105 384.8 318 60.1
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 9.1e-105 384.4 292 65.1
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 2.6e-104 382.9 299 64.2
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 4.5e-104 382.1 289 65.1
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 5.9e-104 381.7 340 60.0
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 5.9e-104 381.7 292 65.1
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 7.7e-104 381.3 342 58.5
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 7.7e-104 381.3 359 58.8
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.7e-103 380.2 326 61.7
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 2.9e-103 379.4 223 88.8
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.9e-103 379.4 310 62.3
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 5.0e-103 378.6 287 63.1
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 6.5e-103 378.3 316 61.4
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 6.5e-103 378.3 299 62.9
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 8.5e-103 377.9 343 57.1
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.4e-102 377.1 352 56.0
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 1.9e-102 376.7 358 57.0
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.9e-102 376.7 341 58.7
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 2.5e-102 376.3 351 57.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 7.2e-102 374.8 306 61.8
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 1.6e-101 373.6 352 55.4
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 2.7e-101 372.9 277 65.0
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 2.7e-101 372.9 337 58.2
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 3.6e-101 372.5 292 63.7
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 7.9e-101 371.3 351 56.7
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.0e-100 370.9 340 57.4
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.8e-100 370.2 316 58.5
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 2.3e-100 369.8 317 60.3
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 2.3e-100 369.8 360 55.3
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 3.0e-100 369.4 310 61.9
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 2.6e-99 366.3 303 60.4
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 9.7e-99 364.4 322 59.9
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.3e-98 364.0 272 66.5
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.3e-98 364.0 353 55.8
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 2.2e-98 363.2 256 67.2
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 2.8e-98 362.8 297 62.3
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 2.8e-98 362.8 314 58.3
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.4e-97 360.5 370 53.2
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.8e-97 360.1 349 55.6
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 2.4e-97 359.8 267 65.5
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 2.4e-97 359.8 325 57.5
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.6e-96 357.1 318 56.0
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 3.5e-96 355.9 308 60.1
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.7e-95 353.6 289 59.9
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 2.2e-95 353.2 318 57.5
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 3.8e-95 352.4 297 60.6
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.9e-94 350.1 327 56.3
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 4.2e-94 349.0 303 59.1
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.5e-94 348.6 341 55.1
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 5.5e-94 348.6 303 58.4
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 5.5e-94 348.6 257 65.8
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 7.2e-94 348.2 286 61.5
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.6e-93 347.1 295 60.0
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.1e-93 346.7 305 60.0
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.7e-93 346.3 332 55.7
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.7e-93 346.3 267 62.9
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.6e-93 345.9 328 55.8
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.4e-92 344.0 281 60.9
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 1.4e-92 344.0 303 58.1
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.8e-92 343.6 286 61.2
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 1.8e-92 343.6 367 53.1
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 3.0e-92 342.8 265 64.9
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 8.8e-92 341.3 312 56.1
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 4.4e-91 339.0 309 56.0
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 7.5e-91 338.2 290 57.6
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 2.2e-90 336.7 337 54.3
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 2.8e-90 336.3 302 57.9
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.7e-90 335.9 311 57.6
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 8.2e-90 334.7 340 52.9
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.1e-89 334.3 319 56.4
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.4e-89 334.0 293 57.0
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 1.0e-87 327.8 310 54.8
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 5.0e-87 325.5 362 50.0
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 6.5e-87 325.1 315 55.9
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 4.2e-86 322.4 339 53.4
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.7e-85 319.7 331 52.0
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 3.0e-84 316.2 331 50.8
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 7.5e-83 311.6 237 64.1
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 9.8e-83 311.2 192 80.2
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.7e-82 310.5 288 57.3
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 2.2e-82 310.1 301 53.5
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 6.3e-82 308.5 305 53.8
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.6e-80 303.9 235 62.6
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 1.6e-80 303.9 286 57.0
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 2.2e-79 300.1 291 53.3
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 8.5e-79 298.1 298 53.0
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 7.2e-78 295.0 273 52.7
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.6e-77 293.9 268 55.6
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 6.8e-76 288.5 263 51.3
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 2.8e-74 283.1 282 50.0
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 8.3e-74 281.6 297 52.2
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 1.4e-73 280.8 175 81.7
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 1.8e-73 280.4 331 47.1
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.8e-73 280.4 297 51.9
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 4.1e-73 279.3 330 47.3
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 4.1e-73 279.3 268 56.0
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 5.0e-71 272.3 306 50.3
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 4.0e-68 262.7 285 48.8
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 4.9e-66 255.8 265 47.5
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 4.9e-66 255.8 306 44.8
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.4e-65 253.4 277 47.7
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 5.6e-62 242.3 329 41.6
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 1.8e-60 237.3 267 45.3
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 3.4e-59 233.0 200 58.5
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.1e-57 228.0 155 70.3
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.6e-56 224.2 159 65.4
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 2.0e-56 223.8 159 65.4
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 2.7e-56 223.4 225 55.1
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 3.0e-55 219.9 182 62.1
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 1.1e-54 218.0 158 65.2
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 4.3e-54 216.1 144 75.0
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 8.1e-53 211.8 184 58.7
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.1e-52 211.5 184 58.2
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 1.8e-52 210.7 128 84.4
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 2.3e-52 210.3 214 53.3
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 5.2e-52 209.1 255 46.7
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 6.6e-47 192.2 135 64.4
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 1.1e-46 191.4 167 55.1
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 4.7e-45 186.0 91 96.7
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 1.4e-44 184.5 152 61.8
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 6.8e-44 182.2 495 29.1
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 1.3e-42 177.9 263 36.1
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 1.9e-38 164.1 114 65.8
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.6e-37 159.8 132 58.3
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 1.8e-36 157.5 275 34.5
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 5.8e-35 152.5 349 29.5
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 2.9e-34 150.2 116 62.1
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.8e-34 149.8 111 64.0
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.1e-33 148.3 115 57.4
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 5.1e-31 139.4 92 70.7
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 5.6e-30 136.0 84 71.4
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.6e-29 134.4 171 46.8
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.6e-27 125.6 97 58.8
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.7e-26 124.4 96 59.4
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 2.1e-24 117.5 90 57.8
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 6.0e-24 115.9 130 49.2
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 3.9e-15 86.7 56 69.6
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 5.1e-15 86.3 68 57.4
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.3e-14 83.6 77 51.9
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.6e-14 82.0 51 70.6
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 8.4e-10 68.9 49 67.3
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 2.3e-07 60.8 45 60.0
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.5e-06 58.2 43 60.5


User provided reference genes

Program Settings