Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p08150 Brassica napus HOM05D008199 ORTHO05D010334 1.3e-24 115.5 55 100.0
BolC4t22425H Brassica oleracea HOM05D008199 ORTHO05D010334 1.3e-24 115.5 55 100.0
BcaC02g12078 Brassica carinata HOM05D008199 ORTHO05D010334 4.8e-24 113.6 55 98.2
A05p06880 Brassica napus HOM05D008199 ORTHO05D010334 4.8e-24 113.6 55 98.2
BraA05t19653Z Brassica rapa HOM05D008199 ORTHO05D010334 4.8e-24 113.6 55 98.2
Aa31LG5G20100 Aethionema arabicum HOM05D008199 ORTHO05D010334 4.9e-21 103.6 54 85.2
Sp4g21800 Schrenkiella parvula HOM05D008199 ORTHO05D010334 1.9e-20 101.7 54 81.5
CARHR134390 Cardamine hirsuta HOM05D008199 ORTHO05D010334 3.2e-20 100.9 55 83.6
AL4G36900 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 1.6e-19 98.6 52 84.6
AL4G36920 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 1.6e-19 98.6 52 84.6
AT2G39500 Arabidopsis thaliana HOM05D008199 ORTHO05D010334 3.5e-19 97.4 52 82.7
Carub.0004s2158 Capsella rubella HOM05D008199 ORTHO05D010334 7.9e-19 96.3 51 84.3
THA.LOC104824262 Tarenaya hassleriana HOM05D008199 ORTHO05D010334 3.9e-18 94.0 53 77.4
Gorai.012G069200 Gossypium raimondii HOM05D008199 ORTHO05D010334 6.7e-18 93.2 52 76.9
Gohir.D04G061900 Gossypium hirsutum HOM05D008199 ORTHO05D010334 1.9e-17 91.7 52 75.0
Gohir.A05G350700 Gossypium hirsutum HOM05D008199 ORTHO05D010334 3.3e-17 90.9 47 83.0
Aqoxy5G00469 Aquilegia oxysepala HOM05D008199 ORTHO05D010334 4.3e-17 90.5 48 79.2
Dinv31422 Davidia involucrata HOM05D000953 ORTHO05D000231 7.4e-17 89.7 52 71.2
CSS0014372 Camellia sinensis var. sinensis HOM05D008199 ORTHO05D010334 1.3e-16 89.0 51 74.5
ECA238G2613 Erigeron canadensis HOM05D008199 ORTHO05D010334 1.6e-16 88.6 48 77.1
Lsat_1_v5_gn_2_117560 Lactuca sativa HOM05D008199 ORTHO05D010334 4.8e-16 87.0 48 75.0
Cpa.g.sc1.358 Carica papaya HOM05D008199 ORTHO05D010334 6.2e-16 86.7 52 71.2
COL.COLO4_14948 Corchorus olitorius HOM05D008199 ORTHO05D010334 1.4e-15 85.5 52 69.2
Thecc.10G048500 Theobroma cacao HOM05D008199 ORTHO05D010334 1.4e-15 85.5 54 68.5
CANSAT11G0099 Cannabis sativa HOM05D008199 ORTHO05D010334 2.4e-15 84.7 50 70.0
Lj5g0016979 Lotus japonicus HOM05D008199 ORTHO05D010334 4.0e-15 84.0 49 71.4
Hma1.2p1_0727F.1_g209100 Hydrangea macrophylla HOM05D008199 ORTHO05D010334 5.3e-15 83.6 51 64.7
Potri.008G051100 Populus trichocarpa HOM05D008199 ORTHO05D010334 5.3e-15 83.6 48 72.9
Nn2g10469 Nelumbo nucifera HOM05D008199 ORTHO05D010334 6.9e-15 83.2 50 68.0
GSVIVG01016602001 Vitis vinifera HOM05D000953 ORTHO05D000231 9.0e-15 82.8 48 68.8
Actinidia02971 Actinidia chinensis HOM05D008199 ORTHO05D010334 1.2e-14 82.4 49 73.5
CiPaw.01G282700 Carya illinoinensis HOM05D008199 ORTHO05D010334 1.2e-14 82.4 45 75.6
ClCG09G020150 Citrullus lanatus HOM05D008199 ORTHO05D010334 1.2e-14 82.4 48 72.9
Glyma.20G099000 Glycine max HOM05D008199 ORTHO05D010334 1.2e-14 82.4 46 76.1
Atru.chr12.520 Acer truncatum HOM05D008199 ORTHO05D010334 2.0e-14 81.6 59 66.1
Actinidia07733 Actinidia chinensis HOM05D008199 ORTHO05D010334 2.0e-14 81.6 48 70.8
Actinidia34336 Actinidia chinensis HOM05D008199 ORTHO05D010334 2.0e-14 81.6 48 70.8
Manes.07G111800 Manihot esculenta HOM05D008199 ORTHO05D010334 5.8e-14 80.1 47 70.2
RcHm_v2.0_Chr1g0366131 Rosa chinensis HOM05D008199 ORTHO05D010334 5.8e-14 80.1 48 68.8
TWI38G1458 Tripterygium wilfordii HOM05D008199 ORTHO05D010334 5.8e-14 80.1 46 71.7
PGR142G1326 Punica granatum HOM05D008199 ORTHO05D010334 7.6e-14 79.7 49 65.3
Sed0003138 Sechium edule HOM05D008199 ORTHO05D010334 7.6e-14 79.7 47 68.1
DCAR_027672 Daucus carota HOM05D008199 ORTHO05D010334 1.0e-13 79.3 51 62.7
TAR633G0052 Trochodendron aralioides HOM05D008199 ORTHO05D010334 1.0e-13 79.3 48 66.7
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 1.0e-13 79.3 46 71.7
Lalb_Chr02g0144051 Lupinus albus HOM05D008199 ORTHO05D010334 1.3e-13 79.0 47 72.3
Medtr1g115355 Medicago truncatula HOM05D008199 ORTHO05D010334 1.3e-13 79.0 47 70.2
Sc20g0002530 Simmondsia chinensis HOM05D008199 ORTHO05D010334 1.3e-13 79.0 48 66.7
PGSC0003DMG400029465 Solanum tuberosum HOM05D008199 ORTHO05D010334 2.2e-13 78.2 48 68.8
CAN.G74.25 Capsicum annuum HOM05D008199 ORTHO05D010334 3.8e-13 77.4 48 68.8
Cfa001517 Carpinus fangiana HOM05D008199 ORTHO05D010334 3.8e-13 77.4 42 76.2
MD01G1123400 Malus domestica HOM05D008199 ORTHO05D010334 3.8e-13 77.4 46 67.4
Phvul.007G011200 Phaseolus vulgaris HOM05D008199 ORTHO05D010334 8.4e-13 76.3 49 65.3
PSO339G4122 Papaver somniferum HOM05D008199 ORTHO05D010334 1.1e-12 75.9 49 71.4
Psat6g236360 Pisum sativum HOM05D008199 ORTHO05D010334 1.1e-12 75.9 41 78.0
Prupe.2G230900 Prunus persica HOM05D008199 ORTHO05D010334 1.4e-12 75.5 48 64.6
Ciclev10033682m.g Citrus clementina HOM05D008199 ORTHO05D010334 1.9e-12 75.1 43 74.4
Oeu021440.1 Olea europaea HOM05D008199 ORTHO05D010334 3.2e-12 74.3 43 72.1
Migut.F01496 Erythranthe guttata HOM05D008199 ORTHO05D010334 4.2e-12 73.9 53 60.4
Duzib128G0439 Durio zibethinus HOM05D008199 ORTHO05D010334 9.3e-12 72.8 51 68.6
Manes.10G036000 Manihot esculenta HOM05D008199 ORTHO05D010334 3.5e-11 70.9 43 67.4
MBI05_g35603_MAGBIO Magnolia biondii HOM05D008199 ORTHO05D010334 3.0e-10 67.8 42 61.9
SEGI_29944 Sequoiadendron giganteum HOM05D008199 ORTHO05D010334 3.0e-10 67.8 42 64.3
SHI12594 Sapria himalayana HOM05D008199 ORTHO05D010334 6.7e-10 66.6 72 47.2
HanXRQChr16g0507891 Helianthus annuus HOM05D008199 ORTHO05D010334 1.4e-07 58.9 50 52.0
Pp3c9_50 Physcomitrium patens HOM05D008199 ORTHO05D010334 1.4e-07 58.9 45 57.8


User provided reference genes

Program Settings