Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p07950 Brassica napus HOM05D000334 ORTHO05D040431 5.3e-18 93.2 44 100.0
BolC4t22412H Brassica oleracea HOM05D000334 ORTHO05D040431 5.4e-10 66.6 35 91.4
Sp4g21910 Schrenkiella parvula HOM05D000334 ORTHO05D000200 7.0e-10 66.2 32 87.5
AL4G37060 Arabidopsis lyrata HOM05D000334 ORTHO05D000200 2.7e-09 64.3 32 84.4
AT2G39650 Arabidopsis thaliana HOM05D000334 ORTHO05D000200 2.7e-09 64.3 32 84.4
Carub.0004s2169 Capsella rubella HOM05D000334 ORTHO05D000200 2.7e-09 64.3 32 84.4
Thhalv10017011m.g Eutrema salsugineum HOM05D000334 ORTHO05D000200 2.7e-09 64.3 32 84.4
BcaC01g05483 Brassica carinata HOM05D000334 ORTHO05D000200 5.9e-09 63.2 32 84.4
A03p22180 Brassica napus HOM05D000334 ORTHO05D000200 5.9e-09 63.2 32 84.4
C03p26260 Brassica napus HOM05D000334 ORTHO05D000200 5.9e-09 63.2 32 84.4
BolC3t15011H Brassica oleracea HOM05D000334 ORTHO05D000200 5.9e-09 63.2 32 84.4
BraA03t11450Z Brassica rapa HOM05D000334 ORTHO05D000200 5.9e-09 63.2 32 84.4
CARHR134490 Cardamine hirsuta HOM05D000334 ORTHO05D000200 5.9e-09 63.2 32 84.4
Aa31LG5G20000 Aethionema arabicum HOM05D000334 ORTHO05D000200 5.0e-08 60.1 32 78.1
Thecc.10G041600 Theobroma cacao HOM05D000334 ORTHO05D000200 5.0e-08 60.1 32 81.2
Dinv26017 Davidia involucrata HOM05D000334 ORTHO05D000200 8.5e-08 59.3 29 89.7
Manes.10G030100 Manihot esculenta HOM05D000334 ORTHO05D000200 8.5e-08 59.3 29 86.2
vmacro10231 Vaccinium macrocarpon HOM05D000334 ORTHO05D000200 8.5e-08 59.3 29 89.7
Lj1A937T98 Lonicera japonica HOM05D000334 ORTHO05D000200 1.1e-07 58.9 32 78.1
Rhsim03G0130500 Rhododendron simsii HOM05D000334 ORTHO05D000200 1.1e-07 58.9 29 82.8
Atru.chr12.447 Acer truncatum HOM05D000334 ORTHO05D000200 1.9e-07 58.2 29 86.2
Ciclev10032209m.g Citrus clementina HOM05D000334 ORTHO05D000200 1.9e-07 58.2 29 86.2
DCAR_027618 Daucus carota HOM05D000334 ORTHO05D000200 1.9e-07 58.2 29 86.2
Duzib114G0862 Durio zibethinus HOM05D000334 ORTHO05D000200 1.9e-07 58.2 29 86.2
HanXRQChr02g0037491 Helianthus annuus HOM05D000334 ORTHO05D000200 1.9e-07 58.2 32 78.1
Rhsim09G0166100 Rhododendron simsii HOM05D000334 ORTHO05D000200 1.9e-07 58.2 29 86.2
RcHm_v2.0_Chr1g0367191 Rosa chinensis HOM05D000334 ORTHO05D000200 1.9e-07 58.2 29 86.2
Dinv03044 Davidia involucrata HOM05D000334 ORTHO05D000200 2.5e-07 57.8 29 86.2
Gohir.A05G349300 Gossypium hirsutum HOM05D000334 ORTHO05D000200 2.5e-07 57.8 29 82.8
COL.COLO4_15047 Corchorus olitorius HOM05D000334 ORTHO05D000200 3.2e-07 57.4 29 82.8
Duzib106G1737 Durio zibethinus HOM05D000334 ORTHO05D000200 3.2e-07 57.4 29 86.2
HanXRQChr14g0457991 Helianthus annuus HOM05D000334 ORTHO05D000200 3.2e-07 57.4 29 86.2
Lsat_1_v5_gn_2_119201 Lactuca sativa HOM05D000334 ORTHO05D000200 3.2e-07 57.4 29 86.2
Actinidia02946 Actinidia chinensis HOM05D000334 ORTHO05D000200 4.2e-07 57.0 31 77.4
CSS0007857 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 4.2e-07 57.0 29 82.8
ECA240G1439 Erigeron canadensis HOM05D000334 ORTHO05D000200 4.2e-07 57.0 29 86.2
MD07G1198900 Malus domestica HOM05D000334 ORTHO05D000200 4.2e-07 57.0 29 82.8
Sabra10G0157200 Salix brachista HOM05D000334 ORTHO05D000200 4.2e-07 57.0 29 82.8
TWI63G1067 Tripterygium wilfordii HOM05D000334 ORTHO05D000200 4.2e-07 57.0 29 86.2
Migut.F01492 Erythranthe guttata HOM05D000334 ORTHO05D000200 5.5e-07 56.6 29 86.2
Oeu064377.1 Olea europaea HOM05D000334 ORTHO05D000200 5.5e-07 56.6 29 82.8
Gohir.D04G063000 Gossypium hirsutum HOM05D000334 ORTHO05D000200 7.2e-07 56.2 29 82.8
Gorai.012G070400 Gossypium raimondii HOM05D000334 ORTHO05D000200 7.2e-07 56.2 29 82.8
MD01G1134400 Malus domestica HOM05D000334 ORTHO05D000200 7.2e-07 56.2 29 82.8
THA.LOC104810030 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 7.2e-07 56.2 32 75.0
CANSAT56G1569 Cannabis sativa HOM05D000334 ORTHO05D000200 9.4e-07 55.8 29 82.8
CANSAT56G3888 Cannabis sativa HOM05D000334 ORTHO05D000200 9.4e-07 55.8 29 82.8
Cpa.g.sc1.408 Carica papaya HOM05D000334 ORTHO05D000200 9.4e-07 55.8 29 82.8
Potri.008G056100 Populus trichocarpa HOM05D000334 ORTHO05D000200 9.4e-07 55.8 29 82.8
Prupe.2G235800 Prunus persica HOM05D000334 ORTHO05D000200 9.4e-07 55.8 29 82.8
Sabra08G0040800 Salix brachista HOM05D000334 ORTHO05D000200 9.4e-07 55.8 29 82.8
Sed0019742 Sechium edule HOM05D000334 ORTHO05D000200 9.4e-07 55.8 29 82.8
GSVIVG01016558001 Vitis vinifera HOM05D000334 ORTHO05D000200 9.4e-07 55.8 29 86.2
Glyma.02G091500 Glycine max HOM05D000334 ORTHO05D000200 1.2e-06 55.5 32 68.8
Glyma.18G291600 Glycine max HOM05D000334 ORTHO05D000200 1.2e-06 55.5 32 68.8
ATR0559G279 Amborella trichopoda HOM05D000334 ORTHO05D000200 1.6e-06 55.1 29 79.3
MELO3C021629.2 Cucumis melo HOM05D000334 ORTHO05D000200 2.1e-06 54.7 29 79.3
CsaV3_5G026680 Cucumis sativus L. HOM05D000334 ORTHO05D000200 2.1e-06 54.7 29 79.3
MBI14_g31101_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 2.1e-06 54.7 29 82.8
MBI14_g35406_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 2.1e-06 54.7 29 82.8
MSTRG.288 Avicennia marina HOM05D000334 ORTHO05D000200 2.7e-06 54.3 29 79.3
Lalb_Chr10g0091601 Lupinus albus HOM05D000334 ORTHO05D000200 2.7e-06 54.3 32 65.6
PGR044G0712 Punica granatum HOM05D000334 ORTHO05D000200 2.7e-06 54.3 29 82.8
Sed0007313 Sechium edule HOM05D000334 ORTHO05D000200 2.7e-06 54.3 29 79.3
TAR633G1689 Trochodendron aralioides HOM05D000334 ORTHO05D000200 2.7e-06 54.3 29 79.3
FvH4_7g22510 Fragaria vesca HOM05D000334 ORTHO05D000200 3.6e-06 53.9 29 79.3
FAN01G1536 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.6e-06 53.9 29 79.3
FAN01G1756 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.6e-06 53.9 29 79.3
FAN06G2773 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.6e-06 53.9 29 79.3
FAN06G4615 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.6e-06 53.9 29 79.3
FAN10G1791 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.6e-06 53.9 29 79.3
Gohir.A10G219400 Gossypium hirsutum HOM05D000334 ORTHO05D000200 3.6e-06 53.9 29 82.8
Gohir.D10G228900 Gossypium hirsutum HOM05D000334 ORTHO05D000200 3.6e-06 53.9 29 82.8
Gorai.011G261400 Gossypium raimondii HOM05D000334 ORTHO05D000200 3.6e-06 53.9 29 82.8
Potri.010G203700 Populus trichocarpa HOM05D000334 ORTHO05D000200 3.6e-06 53.9 29 79.3
QL08p059708 Quercus lobata HOM05D000334 ORTHO05D000200 3.6e-06 53.9 29 75.9
Cfa001471 Carpinus fangiana HOM05D000334 ORTHO05D000200 4.7e-06 53.5 29 75.9
CiPaw.01G287600 Carya illinoinensis HOM05D000334 ORTHO05D000200 4.7e-06 53.5 29 75.9
CiPaw.02G184100 Carya illinoinensis HOM05D000334 ORTHO05D000200 4.7e-06 53.5 29 75.9
FAN03G2662 Fragaria x ananassa HOM05D000334 ORTHO05D000200 4.7e-06 53.5 29 79.3
Actinidia29228 Actinidia chinensis HOM05D000334 ORTHO05D000200 6.1e-06 53.1 29 79.3
Lj1g0026177 Lotus japonicus HOM05D000334 ORTHO05D000200 6.1e-06 53.1 32 65.6
Thecc.10G041800 Theobroma cacao HOM05D000334 ORTHO05D000200 6.1e-06 53.1 29 82.8
Nn2g11114 Nelumbo nucifera HOM05D000334 ORTHO05D000200 8.0e-06 52.8 30 76.7


User provided reference genes

Program Settings