Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 1.6e-92 342.8 178 100.0
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 3.5e-92 341.7 178 99.4
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 1.2e-84 316.6 201 85.1
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 1.3e-78 296.6 207 79.2
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 3.7e-78 295.0 210 79.0
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 6.4e-78 294.3 209 78.0
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.7e-76 288.9 194 82.0
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 3.0e-75 285.4 194 82.0
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 3.9e-75 285.0 194 82.0
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 3.3e-74 282.0 194 80.9
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 3.3e-74 282.0 179 84.9
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 2.8e-73 278.9 194 79.9
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 1.1e-72 276.9 199 77.4
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 1.4e-72 276.6 197 78.2
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.0e-71 272.7 190 77.4
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 5.8e-71 271.2 199 74.9
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 9.9e-71 270.4 197 77.2
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 4.9e-70 268.1 193 75.1
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 6.4e-70 267.7 202 74.3
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 6.4e-70 267.7 202 74.3
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 6.4e-70 267.7 198 75.8
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 1.4e-69 266.5 191 74.3
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 5.1e-67 258.1 178 77.5
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 8.6e-67 257.3 202 70.8
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 1.1e-66 256.9 194 73.7
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 7.3e-66 254.2 193 71.5
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 7.3e-66 254.2 194 72.2
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 1.2e-65 253.4 187 73.3
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 4.7e-65 251.5 212 66.5
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 8.1e-65 250.8 194 70.6
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 2.4e-64 249.2 228 63.6
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 2.6e-63 245.7 194 70.1
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 3.4e-63 245.4 194 70.1
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 2.2e-62 242.7 194 70.1
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 2.9e-62 242.3 194 67.0
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.4e-61 239.2 184 69.0
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.4e-61 239.2 184 69.0
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 3.2e-61 238.8 185 69.7
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 4.2e-61 238.4 194 67.0
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 9.3e-61 237.3 185 70.8
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 2.1e-60 236.1 194 67.5
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 7.8e-60 234.2 185 69.7
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 7.8e-60 234.2 184 67.9
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 2.3e-59 232.6 197 67.5
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 2.3e-59 232.6 192 67.2
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 3.0e-59 232.3 184 66.8
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 5.1e-59 231.5 203 64.5
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 5.1e-59 231.5 185 67.6
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 8.7e-59 230.7 194 66.0
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 8.7e-59 230.7 184 66.8
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 1.9e-58 229.6 208 60.6
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 3.3e-58 228.8 199 61.8
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 4.3e-58 228.4 178 70.2
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 5.6e-58 228.0 195 64.1
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 7.3e-58 227.6 185 67.6
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 7.3e-58 227.6 184 70.7
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 9.6e-58 227.3 179 67.0
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 9.6e-58 227.3 196 62.8
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 9.6e-58 227.3 184 70.1
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 9.6e-58 227.3 194 65.5
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 9.6e-58 227.3 194 65.5
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 9.6e-58 227.3 194 63.9
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 1.6e-57 226.5 185 67.6
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 2.1e-57 226.1 188 66.0
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 2.8e-57 225.7 187 65.8
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 3.6e-57 225.3 194 63.4
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 3.6e-57 225.3 199 61.8
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 6.2e-57 224.6 194 63.4
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 6.2e-57 224.6 185 65.9
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 2.4e-56 222.6 199 63.8
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 3.1e-56 222.2 191 65.4
Sabra10G0148300 Salix brachista HOM05D003476 ORTHO05D004057 3.1e-56 222.2 175 69.7
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 5.3e-56 221.5 169 70.4
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 5.3e-56 221.5 205 58.5
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 1.2e-55 220.3 183 67.8
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 2.0e-55 219.5 185 65.4
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 2.0e-55 219.5 192 61.5
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 1.7e-54 216.5 182 66.5
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 1.7e-54 216.5 191 59.7
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 2.2e-54 216.1 180 66.7
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 2.2e-54 216.1 181 61.9
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 2.9e-54 215.7 189 63.5
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 2.9e-54 215.7 224 52.7
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 3.8e-54 215.3 184 62.0
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 6.4e-54 214.5 173 65.3
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 1.1e-53 213.8 198 59.1
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.4e-53 213.4 193 62.2
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 1.9e-53 213.0 199 60.8
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 1.9e-53 213.0 185 58.9
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 3.2e-53 212.2 183 64.5
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 4.2e-53 211.8 185 63.8
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 5.4e-53 211.5 175 63.4
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 5.4e-53 211.5 192 58.9
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 7.1e-53 211.1 177 61.6
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 7.1e-53 211.1 196 60.2
BraA04t18491Z Brassica rapa HOM05D003476 ORTHO05D004057 2.1e-52 209.5 219 60.3
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 2.1e-52 209.5 187 62.6
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 2.7e-52 209.1 177 64.4
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 2.7e-52 209.1 189 61.4
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 3.0e-51 205.7 181 61.3
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 3.9e-51 205.3 186 60.2
CARHR134880 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.1e-50 203.8 113 92.9
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.3e-50 202.2 203 56.2
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 4.3e-50 201.8 198 58.1
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 7.4e-50 201.1 235 51.1
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 3.7e-49 198.7 167 62.9
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 4.8e-49 198.4 177 59.9
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 1.8e-48 196.4 177 59.9
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 4.0e-48 195.3 169 62.1
Psat2g035640 Pisum sativum HOM05D003476 ORTHO05D004057 6.9e-48 194.5 169 63.9
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 5.8e-47 191.4 189 58.7
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 7.6e-47 191.0 218 54.1
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 7.6e-47 191.0 178 56.7
Dinv34422 Davidia involucrata HOM05D002885 ORTHO05D003350 1.3e-46 190.3 174 60.3
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 1.7e-46 189.9 189 58.2
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 1.7e-46 189.9 170 61.8
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 8.4e-46 187.6 178 64.0
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 1.4e-45 186.8 163 61.3
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 1.9e-45 186.4 188 55.9
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 2.4e-45 186.0 177 56.5
Dinv20956 Davidia involucrata HOM05D003476 ORTHO05D004057 1.6e-44 183.3 166 59.0
Dinv20987 Davidia involucrata HOM05D003476 ORTHO05D004057 1.6e-44 183.3 166 59.0
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 2.1e-44 183.0 168 60.7
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 3.9e-43 178.7 168 57.1
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 2.5e-42 176.0 177 55.4
CARHR253310 Cardamine hirsuta HOM05D003476 ORTHO05D004057 3.3e-42 175.6 114 79.8
RcHm_v2.0_Chr1g0369411 Rosa chinensis HOM05D003476 ORTHO05D004057 4.3e-42 175.3 114 79.8
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 4.8e-41 171.8 196 51.5
HanXRQChr08g0222271 Helianthus annuus HOM05D003476 ORTHO05D004057 9.0e-40 167.5 107 76.6
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 1.5e-39 166.8 148 64.2
MD08G1058200 Malus domestica HOM05D003476 ORTHO05D004057 5.8e-39 164.9 116 74.1
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 7.6e-39 164.5 193 49.7
FvH4_2g40940 Fragaria vesca HOM05D003476 ORTHO05D004057 2.2e-38 162.9 175 53.1
TAR633G1753 Trochodendron aralioides HOM05D003476 ORTHO05D004057 4.9e-38 161.8 109 77.1
FAN27G3190 Fragaria x ananassa HOM05D003476 ORTHO05D004057 8.4e-38 161.0 114 71.9
Cc02_g06910 Coffea canephora HOM05D003476 ORTHO05D004057 1.1e-37 160.6 115 69.6
SalBow6G0374 Salvia bowleyana HOM05D003476 ORTHO05D004057 2.1e-36 156.4 116 66.4
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 9.7e-34 147.5 154 56.5
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 1.3e-33 147.1 181 46.4
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 3.4e-31 139.0 330 33.6
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.9e-29 133.3 132 56.1
MBI14_g36886_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 2.5e-29 132.9 168 48.2
Lj1A950T60 Lonicera japonica HOM05D003476 ORTHO05D004057 1.9e-26 123.2 79 75.9
AagrBONN_evm.TU.Sc2ySwM_228.5499 Anthoceros agrestis HOM05D003476 ORTHO05D004057 2.2e-25 119.8 95 65.3
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 2.2e-25 119.8 136 50.7
vmacro06994 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 1.4e-24 117.1 213 37.6
MBI14_g13584_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.8e-24 116.7 82 69.5
SalBow6G0036 Salvia bowleyana HOM05D003476 ORTHO05D004057 2.0e-23 113.2 78 70.5
MBI16_g37731_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.4e-23 112.5 73 72.6
CBR_g48322 Chara braunii HOM05D003476 ORTHO05D004057 1.7e-22 110.2 109 53.2
Aqoxy214s003 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 2.2e-22 109.8 165 41.8
ATR0618G195 Amborella trichopoda HOM05D003476 ORTHO05D004057 3.2e-21 105.9 66 74.2
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 1.6e-20 103.6 143 49.0
BcaB02g09065 Brassica carinata HOM05D003476 ORTHO05D004057 2.7e-20 102.8 61 86.9
Atru.chr12.241 Acer truncatum HOM05D003476 ORTHO05D004057 4.7e-20 102.1 179 42.5
CARHR134890 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.4e-19 100.5 59 89.8
CDE03G0334 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 1.8e-19 100.1 168 39.9
Sc06g0000400 Simmondsia chinensis HOM05D003476 ORTHO05D004057 8.8e-19 97.8 105 55.2
CARHR253320 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.3e-17 94.0 61 78.7
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 1.7e-17 93.6 113 47.8
Prupe.2G246200 Prunus persica HOM05D003476 ORTHO05D004057 8.2e-17 91.3 62 74.2
Solyc04g072110.4 Solanum lycopersicum HOM05D003476 ORTHO05D004057 8.2e-17 91.3 59 71.2
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 9.1e-16 87.8 69 63.8
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 1.2e-15 87.4 69 63.8
Oeu036632.1 Olea europaea HOM05D003476 ORTHO05D004057 2.6e-15 86.3 59 72.9
MBI08_g04934_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 7.7e-15 84.7 68 61.8
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 1.0e-14 84.3 68 63.2
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 2.2e-14 83.2 68 63.2
Lj1A950T61 Lonicera japonica HOM05D003476 ORTHO05D004057 5.0e-14 82.0 70 62.9
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 6.5e-14 81.6 68 61.8
MD08G1058400 Malus domestica HOM05D003476 ORTHO05D004057 2.5e-13 79.7 67 61.2
ClCG07G004010 Citrullus lanatus HOM05D003476 ORTHO05D004057 5.5e-13 78.6 51 72.5
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 2.1e-12 76.6 54 66.7
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 3.6e-12 75.9 69 59.4
Cpa.g.c40050 Carica papaya HOM05D003476 ORTHO05D004057 2.3e-11 73.2 52 65.4
Hund03462 Selenicereus undatus HOM05D003476 ORTHO05D004057 3.9e-11 72.4 92 46.7
FAN15G1698 Fragaria x ananassa HOM05D003476 ORTHO05D004057 6.7e-11 71.6 69 55.1
HanXRQChr08g0222281 Helianthus annuus HOM05D003476 ORTHO05D004057 6.7e-11 71.6 54 59.3
TAR633G0614 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.5e-10 70.5 67 55.2
Cre12.g524200 Chlamydomonas reinhardtii HOM05D003476 ORTHO05D004057 4.4e-10 68.9 187 29.4
Sopen04g028030 Solanum pennellii HOM05D003476 ORTHO05D004057 7.4e-10 68.2 61 54.1
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 9.7e-10 67.8 75 49.3
MBI14_g33799_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 9.7e-10 67.8 143 35.7
Zm00001eb420270 Zea mays HOM05D000224 ORTHO05D002390 4.8e-09 65.5 47 68.1
ATR0618G113 Amborella trichopoda HOM05D003476 ORTHO05D004057 2.4e-08 63.2 54 53.7
vmacro06993 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 2.4e-08 63.2 44 63.6
BolC3t15040H Brassica oleracea HOM05D003476 ORTHO05D004057 7.0e-08 61.6 35 88.6


User provided reference genes

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