Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 8.4e-246 853.2 421 100.0
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 8.4e-246 853.2 421 100.0
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 2.6e-231 805.1 421 94.1
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-229 799.7 421 93.8
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 2.6e-218 761.9 426 89.4
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 6.3e-201 704.1 424 80.4
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.4e-200 702.2 424 80.4
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-198 696.4 425 79.3
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 3.8e-198 694.9 424 79.2
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.5e-197 693.0 435 78.9
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 2.5e-197 692.2 423 80.1
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 4.2e-197 691.4 426 79.3
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.3e-193 679.9 440 77.3
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 2.8e-193 678.7 437 77.1
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 2.4e-192 675.6 425 76.5
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 9.2e-192 673.7 425 76.0
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 3.5e-191 671.8 434 77.4
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.7e-190 669.5 437 76.0
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 2.3e-190 669.1 425 76.7
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 5.6e-189 664.5 425 75.5
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 5.6e-189 664.5 425 75.5
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 7.3e-189 664.1 442 75.3
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 4.7e-188 661.4 425 76.2
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 1.8e-187 659.4 436 75.0
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.1e-173 613.6 433 71.1
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.4e-171 606.7 433 69.3
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 3.4e-170 602.1 438 69.2
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.7e-166 589.7 432 67.4
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 4.3e-165 585.1 433 68.1
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-163 580.5 428 67.1
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 1.1e-163 580.5 428 67.1
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 1.1e-163 580.5 428 67.1
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.8e-163 579.7 433 67.4
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 2.4e-163 579.3 428 67.1
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 3.1e-163 578.9 439 66.5
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 7.6e-162 574.3 430 66.7
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.3e-158 563.5 418 67.0
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 9.9e-146 520.8 468 57.5
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 1.3e-140 503.8 460 56.3
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 5.3e-139 498.4 467 55.7
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 5.3e-139 498.4 437 57.4
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.0e-138 496.5 460 56.3
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.6e-138 496.1 460 56.3
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 3.4e-138 495.7 467 54.8
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 4.5e-138 495.4 442 56.3
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 9.9e-138 494.2 468 55.6
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.2e-137 493.0 461 56.0
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.9e-137 491.9 459 56.2
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 8.4e-137 491.1 467 55.5
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.1e-136 490.7 460 55.9
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.9e-136 490.0 469 55.9
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 5.5e-136 488.4 463 55.5
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 5.5e-136 488.4 470 54.3
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 7.1e-136 488.0 467 54.8
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-135 487.3 459 55.8
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.2e-135 487.3 470 53.6
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.6e-135 486.9 467 54.6
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 3.5e-135 485.7 467 55.2
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.0e-135 485.0 467 54.4
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 7.9e-135 484.6 468 53.6
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 1.3e-134 483.8 473 52.9
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 6.7e-134 481.5 463 54.2
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.7e-134 481.1 466 54.3
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.1e-133 480.7 469 53.1
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.1e-133 480.7 468 53.2
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.9e-133 479.9 461 53.8
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.3e-133 479.2 466 54.1
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 4.3e-133 478.8 473 52.4
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 4.8e-132 475.3 468 52.1
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 8.2e-132 474.6 468 53.4
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 5.8e-130 468.4 444 54.5
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.6e-130 468.0 461 52.3
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 2.2e-129 466.5 468 53.0
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 2.9e-129 466.1 451 53.4
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 6.5e-129 464.9 463 51.4
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 6.5e-129 464.9 471 51.6
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 6.5e-129 464.9 467 52.5
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 8.4e-129 464.5 468 52.1
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 4.2e-128 462.2 464 50.6
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 4.6e-127 458.8 427 54.3
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 6.0e-127 458.4 473 51.0
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 6.0e-127 458.4 450 53.8
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 7.9e-127 458.0 463 50.5
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.0e-126 457.6 475 50.7
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.3e-126 457.2 468 50.6
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-126 456.8 430 57.2
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 2.3e-126 456.4 471 50.5
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 3.0e-126 456.1 465 51.4
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 6.7e-126 454.9 469 50.1
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 8.7e-126 454.5 453 52.5
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.9e-125 453.4 469 51.6
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 4.3e-125 452.2 445 53.3
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 5.7e-125 451.8 446 54.0
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 5.7e-125 451.8 470 51.9
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.3e-124 450.7 445 53.0
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.6e-124 450.3 453 53.2
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 2.2e-124 449.9 455 50.8
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 2.8e-124 449.5 454 51.8
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.8e-124 448.7 453 52.8
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 8.2e-124 448.0 467 50.1
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 8.2e-124 448.0 471 51.0
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.1e-123 447.6 452 50.9
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 2.4e-123 446.4 443 52.1
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 2.6e-122 443.0 472 48.9
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 4.5e-122 442.2 437 51.7
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.0e-121 441.0 463 49.9
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 8.5e-121 438.0 472 50.2
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 8.5e-121 438.0 451 50.3
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.1e-120 437.6 462 50.0
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.1e-120 437.6 430 57.4
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.9e-120 436.8 445 49.7
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 4.2e-120 435.6 457 50.8
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 2.1e-119 433.3 461 50.8
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 3.6e-119 432.6 446 48.7
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.6e-119 432.6 446 50.9
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 6.1e-119 431.8 469 51.0
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.5e-117 427.2 463 49.9
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 2.5e-117 426.4 460 49.3
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 3.3e-117 426.0 439 51.7
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 4.3e-117 425.6 439 51.0
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.7e-116 423.7 468 47.4
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.7e-116 422.5 465 48.8
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 6.3e-116 421.8 442 50.0
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.8e-115 420.2 445 49.0
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.4e-115 419.9 450 48.4
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.4e-115 419.9 435 51.0
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.1e-115 419.1 455 46.8
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 6.9e-115 418.3 452 49.6
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.5e-114 417.2 460 47.4
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 5.9e-114 415.2 454 46.9
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 7.7e-114 414.8 467 48.4
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 2.9e-113 412.9 461 47.9
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 3.8e-113 412.5 415 49.4
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 8.5e-113 411.4 441 48.3
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 9.4e-112 407.9 439 49.2
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.6e-111 407.1 465 45.4
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 5.1e-110 402.1 406 51.0
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.7e-110 401.7 458 45.6
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 8.2e-108 394.8 419 48.9
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.2e-106 391.0 401 47.1
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 5.9e-106 388.7 198 96.0
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-105 387.5 198 95.5
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 2.0e-101 373.6 454 45.2
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 5.7e-101 372.1 381 49.6
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 4.8e-100 369.0 458 45.0
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 2.6e-98 363.2 438 47.3
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.7e-97 360.5 435 43.7
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 4.0e-94 349.4 425 44.5
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 1.1e-91 341.3 296 56.4
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 1.1e-91 341.3 296 56.4
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 8.5e-89 331.6 427 41.9
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.4e-85 319.3 433 40.4
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.8e-85 318.2 431 40.6
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.3e-84 317.8 430 41.6
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.8e-83 313.9 430 40.2
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.0e-78 296.2 421 40.4
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 6.2e-63 245.7 164 74.4
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 7.0e-59 232.3 335 38.2
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 3.1e-54 216.9 337 40.9
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.2e-54 216.1 215 50.2
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.9e-43 181.0 163 52.8
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-42 177.9 274 43.4
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 2.3e-41 174.1 118 77.1
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 3.0e-41 173.7 204 47.5
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 2.9e-36 157.1 83 91.6
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 3.2e-35 153.7 200 44.0
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 2.7e-34 150.6 85 88.2
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 3.2e-27 127.1 125 52.0
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.5e-24 117.5 327 27.2
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 3.7e-15 87.0 99 44.4
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 1.4e-14 85.1 42 92.9
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 4.9e-12 76.6 60 73.3


User provided reference genes

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