Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-110 402.5 198 100.0
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 4.1e-110 401.4 198 99.5
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 2.8e-106 388.7 198 95.5
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 2.8e-106 388.7 198 95.5
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 5.8e-104 380.9 198 93.9
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 5.8e-104 380.9 198 93.9
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 3.5e-93 345.1 201 86.1
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 2.0e-88 329.3 199 80.4
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.6e-88 328.9 199 80.4
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 5.8e-88 327.8 199 79.9
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 7.6e-88 327.4 199 79.4
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 2.9e-87 325.5 199 79.9
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 2.4e-86 322.4 199 78.9
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 6.0e-85 317.8 203 76.4
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.7e-84 316.2 203 75.9
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.1e-83 313.5 203 74.9
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.6e-82 309.7 198 72.7
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.8e-82 308.9 203 74.4
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 4.8e-82 308.1 198 73.2
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 4.8e-82 308.1 198 72.2
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 6.2e-82 307.8 202 74.3
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 8.1e-82 307.4 198 72.2
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 8.1e-82 307.4 198 72.2
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 4.0e-81 305.1 203 73.4
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 4.0e-81 305.1 203 73.9
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 2.0e-80 302.8 198 72.2
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 8.4e-79 297.4 206 68.9
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.0e-76 290.4 205 67.8
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.3e-76 290.0 199 72.4
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 3.0e-76 288.9 205 67.3
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 3.0e-76 288.9 205 67.3
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.0e-76 288.9 204 67.6
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 5.1e-76 288.1 204 68.6
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-75 286.2 205 66.8
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 1.9e-75 286.2 205 66.8
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.1e-74 282.7 204 67.2
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.6e-74 282.0 204 67.2
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 6.2e-74 281.2 200 69.5
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 2.2e-71 272.7 203 65.0
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 2.4e-70 269.2 203 65.5
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 9.3e-70 267.3 178 73.6
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 3.9e-68 261.9 203 62.1
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 2.5e-67 259.2 203 61.6
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.5e-67 259.2 203 60.6
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 4.8e-66 255.0 203 60.6
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.1e-65 253.8 201 61.2
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.8e-65 253.1 202 59.9
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.8e-65 253.1 202 59.9
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.1e-65 252.3 202 59.9
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.1e-65 252.3 202 59.9
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 4.0e-65 251.9 203 58.6
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 4.0e-65 251.9 203 59.1
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 5.3e-65 251.5 203 59.1
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 5.3e-65 251.5 205 56.6
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 1.2e-64 250.4 205 58.5
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-64 250.4 202 59.4
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.5e-64 250.0 203 57.6
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.5e-64 250.0 203 57.6
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 2.6e-64 249.2 203 59.1
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.6e-64 249.2 200 59.5
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.4e-64 248.8 202 58.9
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.5e-64 248.4 203 58.1
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 4.5e-64 248.4 203 59.6
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 5.8e-64 248.1 205 56.6
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 7.6e-64 247.7 203 58.6
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 1.3e-63 246.9 203 57.1
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 1.3e-63 246.9 203 57.1
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.3e-63 246.9 203 58.6
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.7e-63 246.5 203 57.6
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.7e-63 246.5 204 54.4
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 2.2e-63 246.1 198 59.1
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 2.2e-63 246.1 202 56.9
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 2.9e-63 245.7 203 57.1
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.9e-63 245.7 203 56.2
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 2.9e-63 245.7 203 56.7
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.8e-63 245.4 203 59.6
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 4.9e-63 245.0 209 56.5
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 8.4e-63 244.2 203 59.1
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 1.1e-62 243.8 207 56.5
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.4e-62 243.4 209 56.5
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.5e-62 242.7 202 57.4
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.2e-62 242.3 203 58.6
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 5.5e-62 241.5 164 72.6
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 5.5e-62 241.5 203 57.6
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 5.5e-62 241.5 203 56.2
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 5.5e-62 241.5 205 55.6
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.1e-62 241.1 203 58.6
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 7.1e-62 241.1 204 56.9
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 7.1e-62 241.1 203 55.2
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.2e-61 240.4 198 58.1
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 4.6e-61 238.4 205 57.1
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 4.6e-61 238.4 206 57.8
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 4.6e-61 238.4 204 55.9
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 6.0e-61 238.0 203 56.7
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.3e-60 236.9 203 56.7
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.3e-60 236.9 203 57.1
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.8e-60 236.5 198 59.6
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.8e-60 236.5 200 57.5
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.8e-60 236.5 203 55.7
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.8e-60 236.5 196 58.2
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 3.9e-60 235.3 203 56.7
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 5.1e-60 235.0 205 56.6
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 8.7e-60 234.2 204 53.9
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 8.7e-60 234.2 203 58.6
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.1e-59 233.8 203 58.6
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.1e-59 233.8 204 54.9
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.1e-59 233.8 205 55.6
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.5e-59 233.4 205 59.5
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.5e-59 233.4 200 56.5
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 2.5e-59 232.6 203 57.1
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 2.5e-59 232.6 199 56.8
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 2.5e-59 232.6 195 60.5
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 7.4e-59 231.1 205 58.0
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 9.6e-59 230.7 197 58.4
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.3e-58 230.3 198 57.6
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 1.3e-58 230.3 196 58.2
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 2.1e-58 229.6 204 55.9
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 2.8e-58 229.2 199 56.3
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.7e-58 228.8 204 54.4
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 8.2e-58 227.6 203 53.2
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 1.1e-57 227.3 203 55.7
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.4e-57 226.9 203 55.7
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 1.8e-57 226.5 205 55.1
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.4e-57 226.1 206 51.0
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 4.1e-57 225.3 197 56.9
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.3e-57 224.9 204 51.0
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 9.0e-57 224.2 203 54.7
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 9.0e-57 224.2 198 54.0
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 9.0e-57 224.2 185 56.8
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.5e-56 223.4 207 54.1
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.0e-56 223.0 203 52.7
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.4e-56 222.2 203 53.7
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.9e-56 221.5 203 50.7
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.0e-55 220.7 200 53.5
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.3e-55 220.3 192 56.2
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.7e-55 219.9 198 54.0
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.2e-55 219.5 205 49.8
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 3.8e-55 218.8 204 51.0
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 6.5e-55 218.0 201 54.2
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 3.2e-54 215.7 199 54.8
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 4.2e-54 215.3 197 54.3
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 7.2e-54 214.5 207 51.7
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 9.3e-54 214.2 195 51.8
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.6e-53 213.4 208 49.5
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 2.1e-53 213.0 198 54.5
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.0e-52 210.7 192 55.2
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 1.0e-52 210.7 195 50.8
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 2.3e-52 209.5 199 52.3
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 5.0e-47 191.8 207 49.8
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 7.2e-46 188.0 209 48.3
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 9.4e-46 187.6 205 52.7
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.8e-41 173.3 216 43.5
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.1e-41 172.6 222 44.1
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 4.1e-41 172.2 118 76.3
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.9e-41 171.4 222 43.7
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.8e-39 165.6 223 43.0
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 8.5e-39 164.5 222 41.4
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.4e-38 163.7 157 50.3
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.9e-38 163.3 218 41.7
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 2.3e-36 156.4 83 91.6
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 2.2e-34 149.8 85 88.2
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.4e-28 130.6 105 55.2
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 1.1e-27 127.5 125 51.2
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.7e-19 98.6 130 42.3
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 7.7e-16 88.2 42 95.2
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.5e-14 82.0 68 52.9
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 5.0e-07 58.9 61 42.6
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 3.3e-06 56.2 80 40.0


User provided reference genes

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