Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.7e-73 279.3 142 100.0
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 1.5e-37 159.8 137 62.8
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 2.8e-36 155.6 137 63.5
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 8.2e-36 154.1 135 61.5
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 7.0e-35 151.0 135 60.7
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 2.0e-34 149.4 135 60.0
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 2.0e-34 149.4 135 60.0
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 3.5e-34 148.7 135 60.0
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 3.5e-34 148.7 135 60.0
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 1.0e-33 147.1 135 60.7
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.0e-33 147.1 135 60.7
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.0e-33 147.1 135 60.7
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.3e-33 146.7 135 59.3
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.3e-33 146.7 135 60.7
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.1e-32 143.7 135 59.3
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.2e-31 140.2 135 57.0
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 8.0e-31 137.5 135 56.3
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.7e-26 122.5 127 53.5
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.7e-26 122.5 127 53.5
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 2.7e-26 122.5 127 53.5
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.0e-25 120.6 127 52.0
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.3e-25 120.2 87 70.1
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.7e-25 119.8 87 67.8
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 5.0e-25 118.2 127 51.2
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 1.5e-24 116.7 87 66.7
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.9e-24 116.3 127 50.4
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.2e-23 113.6 127 49.6
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 1.4e-22 110.2 126 50.8
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 5.2e-22 108.2 135 45.2
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 5.2e-22 108.2 135 45.2
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 5.2e-22 108.2 135 48.1
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 6.8e-22 107.8 83 66.3
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 6.8e-22 107.8 79 69.6
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 1.2e-21 107.1 124 48.4
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 2.0e-21 106.3 135 47.4
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 2.0e-21 106.3 135 46.7
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.6e-21 105.9 79 68.4
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.6e-21 105.9 79 68.4
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 2.6e-21 105.9 79 69.6
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 4.4e-21 105.1 135 45.2
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 5.7e-21 104.8 135 45.2
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 5.7e-21 104.8 125 48.0
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 5.7e-21 104.8 135 43.7
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 9.8e-21 104.0 102 54.9
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 9.8e-21 104.0 133 44.4
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 9.8e-21 104.0 124 44.4
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 9.8e-21 104.0 80 67.5
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 1.3e-20 103.6 134 45.5
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.7e-20 103.2 133 45.1
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 2.2e-20 102.8 114 49.1
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 2.2e-20 102.8 134 46.3
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 2.2e-20 102.8 114 49.1
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.8e-20 102.4 80 66.2
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 2.8e-20 102.4 87 58.6
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 2.8e-20 102.4 135 45.2
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 3.7e-20 102.1 134 45.5
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 3.7e-20 102.1 135 45.9
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 4.8e-20 101.7 89 57.3
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.8e-20 101.7 89 57.3
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.8e-20 101.7 89 57.3
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 4.8e-20 101.7 89 57.3
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 4.8e-20 101.7 127 44.9
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 6.3e-20 101.3 133 45.1
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 6.3e-20 101.3 80 62.5
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 6.3e-20 101.3 80 61.2
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 6.3e-20 101.3 124 43.5
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 1.1e-19 100.5 89 56.2
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 1.1e-19 100.5 79 65.8
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.4e-19 100.1 133 44.4
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 1.4e-19 100.1 89 57.3
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.8e-19 99.8 124 46.0
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.8e-19 99.8 115 49.6
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 1.8e-19 99.8 124 42.7
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 2.4e-19 99.4 80 62.5
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 2.4e-19 99.4 89 53.9
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 2.4e-19 99.4 89 55.1
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 3.1e-19 99.0 133 45.1
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 3.1e-19 99.0 87 56.3
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 4.1e-19 98.6 133 43.6
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 5.4e-19 98.2 124 42.7
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 7.0e-19 97.8 137 46.7
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 7.0e-19 97.8 114 50.0
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 7.0e-19 97.8 124 41.9
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 7.0e-19 97.8 124 41.9
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.0e-18 96.3 80 58.8
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.7e-18 95.9 80 58.8
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 2.7e-18 95.9 80 60.0
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 5.9e-18 94.7 112 48.2
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 7.7e-18 94.4 138 42.8
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.3e-17 93.6 138 42.8
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.3e-17 93.6 79 59.5
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 2.3e-17 92.8 124 42.7
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 2.3e-17 92.8 135 40.0
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 2.9e-17 92.4 128 41.4
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 2.9e-17 92.4 80 60.0
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 3.8e-17 92.0 80 57.5
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 5.0e-17 91.7 80 55.0
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 8.6e-17 90.9 79 58.2
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 8.6e-17 90.9 79 58.2
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 8.6e-17 90.9 124 40.3
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 1.1e-16 90.5 76 61.8
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 1.9e-16 89.7 79 60.8
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 1.9e-16 89.7 80 53.8
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 2.5e-16 89.4 80 56.2
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 4.2e-16 88.6 124 39.5
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 4.2e-16 88.6 127 40.9
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 7.2e-16 87.8 79 62.0
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 9.5e-16 87.4 80 57.5
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.2e-15 87.0 131 42.7
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.6e-15 86.7 80 56.2
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 1.6e-15 86.7 121 41.3
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 6.1e-15 84.7 124 39.5
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 8.0e-15 84.3 135 39.3
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 8.9e-14 80.9 137 40.1
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 2.0e-13 79.7 137 40.1
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 5.7e-13 78.2 96 44.8
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.7e-12 76.6 37 97.3
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 2.2e-12 76.3 85 48.2
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.8e-12 75.9 65 63.1
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 4.9e-12 75.1 87 46.0
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 7.0e-11 71.2 76 50.0
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.6e-10 70.1 80 43.8
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 3.5e-10 68.9 85 47.1
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 2.5e-08 62.8 105 38.1
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 7.3e-08 61.2 115 34.8
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 5.2e-06 55.1 31 83.9


User provided reference genes

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