Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 4.9e-140 501.1 253 100.0
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 4.9e-140 501.1 253 100.0
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 1.0e-113 413.7 257 85.6
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 1.3e-113 413.3 257 85.6
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 5.3e-94 348.2 279 71.3
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 7.2e-91 337.8 278 69.8
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 1.7e-84 316.6 279 67.0
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 7.2e-83 311.2 275 64.4
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 2.1e-82 309.7 270 67.8
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 2.1e-82 309.7 274 65.3
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 5.5e-75 285.0 257 65.4
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 3.0e-73 279.3 263 63.5
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 3.0e-73 279.3 263 63.5
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 3.7e-71 272.3 267 59.9
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 3.6e-66 255.8 262 60.3
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.6e-58 230.3 254 52.0
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.4e-54 216.5 271 47.2
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 1.1e-51 207.6 294 44.9
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 1.2e-48 197.6 290 45.9
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 9.8e-48 194.5 272 44.9
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 1.1e-46 191.0 303 41.3
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 3.1e-46 189.5 316 42.1
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 5.4e-46 188.7 314 40.4
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 5.4e-46 188.7 288 44.8
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 2.0e-45 186.8 263 42.6
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 2.7e-45 186.4 306 40.5
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 7.8e-45 184.9 311 41.5
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 1.0e-44 184.5 321 41.1
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 1.0e-44 184.5 259 46.3
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 2.3e-44 183.3 310 42.3
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 2.3e-44 183.3 304 41.8
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 2.9e-44 183.0 303 40.9
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 5.0e-44 182.2 313 39.3
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 5.0e-44 182.2 310 41.9
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 8.6e-44 181.4 297 39.1
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 8.6e-44 181.4 301 38.9
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 1.1e-43 181.0 297 41.1
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.5e-43 180.6 316 38.9
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 1.5e-43 180.6 298 40.6
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 1.9e-43 180.3 311 38.9
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.9e-43 180.3 275 40.4
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.9e-43 180.3 278 40.3
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.9e-43 180.3 299 39.8
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.9e-43 180.3 301 37.5
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 2.5e-43 179.9 279 41.6
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 7.3e-43 178.3 297 41.1
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.2e-42 177.6 293 39.6
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.2e-42 177.6 322 39.4
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.1e-42 176.8 312 39.4
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 2.8e-42 176.4 313 40.9
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.6e-42 176.0 316 38.9
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 4.7e-42 175.6 296 38.9
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 4.7e-42 175.6 314 39.8
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.0e-41 174.5 325 40.6
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 1.8e-41 173.7 325 40.3
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.8e-41 173.7 276 39.5
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 2.3e-41 173.3 297 37.7
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 5.2e-41 172.2 300 38.7
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 5.2e-41 172.2 318 39.3
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 6.8e-41 171.8 300 39.0
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 6.8e-41 171.8 320 40.0
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 8.9e-41 171.4 309 39.5
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.2e-40 171.0 307 39.4
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 1.5e-40 170.6 310 40.6
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 3.4e-40 169.5 301 38.2
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 4.4e-40 169.1 305 37.4
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 4.4e-40 169.1 311 37.6
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 5.8e-40 168.7 315 39.7
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 9.8e-40 167.9 312 41.0
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.3e-39 167.5 311 36.7
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 1.7e-39 167.2 300 39.3
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 2.2e-39 166.8 270 43.0
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 2.2e-39 166.8 295 38.6
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 2.9e-39 166.4 312 40.7
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 6.4e-39 165.2 247 42.1
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 8.3e-39 164.9 306 36.3
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 8.3e-39 164.9 306 37.6
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 1.1e-38 164.5 316 37.3
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 1.1e-38 164.5 293 39.6
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 1.4e-38 164.1 317 37.5
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.4e-38 163.3 317 37.5
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.2e-38 162.9 317 37.2
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 4.1e-38 162.5 292 38.7
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 5.4e-38 162.2 306 38.6
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.0e-38 161.8 314 37.3
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.2e-37 161.0 320 36.6
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 1.6e-37 160.6 326 38.0
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 2.0e-37 160.2 316 38.3
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 2.0e-37 160.2 284 40.5
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.7e-37 159.8 293 38.2
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 2.7e-37 159.8 334 35.9
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 3.5e-37 159.5 340 35.3
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.6e-37 159.1 317 36.9
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 6.0e-37 158.7 285 40.7
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 6.0e-37 158.7 317 36.9
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 6.0e-37 158.7 299 38.1
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 7.8e-37 158.3 316 37.0
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 3.0e-36 156.4 310 38.1
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 5.0e-36 155.6 321 34.6
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 5.0e-36 155.6 291 38.1
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 8.6e-36 154.8 317 36.6
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 8.6e-36 154.8 228 45.6
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 1.1e-35 154.5 281 37.7
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.1e-35 154.5 264 38.3
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.9e-35 153.7 279 39.1
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 1.9e-35 153.7 299 36.5
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.3e-35 152.9 306 34.0
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 1.6e-34 150.6 299 34.8
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.1e-34 150.2 308 34.1
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 2.8e-34 149.8 231 40.3
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 4.7e-34 149.1 282 39.7
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 4.7e-34 149.1 324 36.1
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 1.8e-33 147.1 282 37.2
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 2.3e-33 146.7 266 38.3
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 4.0e-33 146.0 306 36.3
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 4.0e-33 146.0 295 38.3
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 5.2e-33 145.6 280 38.9
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 5.2e-33 145.6 285 37.5
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 5.2e-33 145.6 268 38.4
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 1.2e-32 144.4 287 36.6
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 4.4e-32 142.5 278 38.1
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 7.5e-32 141.7 225 39.6
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 9.8e-32 141.4 302 34.1
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 1.3e-31 141.0 302 32.5
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 1.7e-31 140.6 292 33.6
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 3.2e-30 136.3 272 37.1
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 4.1e-30 136.0 274 36.9
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 4.1e-30 136.0 292 36.0
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 5.4e-30 135.6 255 37.6
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 7.0e-30 135.2 273 37.0
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 9.2e-30 134.8 271 36.9
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 2.0e-29 133.7 273 35.2
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 2.0e-29 133.7 273 35.2
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 2.0e-29 133.7 311 32.8
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 1.3e-28 131.0 232 40.5
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 1.5e-27 127.5 217 36.4
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 3.3e-27 126.3 301 31.2
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 2.8e-26 123.2 69 92.8
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 2.8e-26 123.2 69 92.8
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 8.1e-26 121.7 280 36.8
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 1.1e-25 121.3 308 32.5
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.1e-25 121.3 262 34.7
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.4e-25 120.9 265 36.2
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 3.4e-24 116.3 65 92.3
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 3.4e-24 116.3 65 92.3
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 3.4e-24 116.3 263 33.8
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 5.8e-24 115.5 294 33.3
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 9.9e-24 114.8 280 34.3
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.3e-23 114.4 264 33.7
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 1.4e-22 110.9 306 33.3
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 7.1e-22 108.6 287 32.4
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.5e-21 106.3 243 34.6
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 1.0e-20 104.8 233 37.3
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 1.0e-20 104.8 239 32.6
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 3.0e-20 103.2 225 32.4
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 6.6e-20 102.1 178 36.5
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 8.6e-20 101.7 99 48.5
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 8.6e-20 101.7 232 35.3
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 1.1e-19 101.3 302 31.5
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 2.8e-18 96.7 152 39.5
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 2.8e-18 96.7 266 35.0
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 3.1e-17 93.2 259 33.6
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 5.2e-17 92.4 142 37.3
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 8.9e-17 91.7 279 30.1
BcaC02g12160 Brassica carinata HOM05D001925 ORTHO05D004257 2.6e-16 90.1 105 56.2
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 2.6e-16 90.1 286 30.8
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 7.6e-16 88.6 287 27.9
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 7.6e-16 88.6 255 29.0
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 1.3e-15 87.8 259 32.0
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 8.4e-15 85.1 156 40.4
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 3.2e-14 83.2 205 33.2
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 3.2e-14 83.2 205 33.2
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 9.2e-14 81.6 232 30.2
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.2e-13 81.3 103 42.7
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 1.6e-13 80.9 215 32.6
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 7.8e-13 78.6 273 28.2
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.7e-12 77.4 122 42.6
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 2.3e-12 77.0 355 25.1
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 7.3e-11 72.0 243 29.2
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 1.6e-10 70.9 222 25.7
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 5.2e-09 65.9 91 39.6
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 9.0e-09 65.1 70 44.3
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 3.2e-06 56.6 89 37.1
SEGI_37364 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 5.4e-06 55.8 240 25.8
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 7.1e-06 55.5 115 31.3


User provided reference genes

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