Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p06260 Brassica napus HOM05D003075 ORTHO05D003430 1.3e-31 139.4 89 100.0
BcaB02g08941 Brassica carinata HOM05D003075 ORTHO05D003430 1.6e-13 79.3 43 88.4
AT2G45330 Arabidopsis thaliana HOM05D003075 ORTHO05D003430 3.6e-13 78.2 69 60.9
Carub.0004s2796 Capsella rubella HOM05D003075 ORTHO05D003430 3.6e-13 78.2 43 88.4
AL4G44430 Arabidopsis lyrata HOM05D003075 ORTHO05D003430 1.0e-12 76.6 43 86.0
Sp4g27360 Schrenkiella parvula HOM05D003075 ORTHO05D003430 1.0e-12 76.6 43 83.7
A05p05320 Brassica napus HOM05D003566 ORTHO05D003430 1.8e-12 75.9 43 86.0
BraA05t19501Z Brassica rapa HOM05D003075 ORTHO05D003430 1.8e-12 75.9 43 86.0
Ciclev10009039m.g Citrus clementina HOM05D003075 ORTHO05D003430 1.8e-12 75.9 47 78.7
Thhalv10001570m.g Eutrema salsugineum HOM05D003075 ORTHO05D003430 1.8e-12 75.9 43 86.0
Oeu064471.1 Olea europaea HOM05D003075 ORTHO05D003430 3.0e-12 75.1 56 64.3
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 4.0e-12 74.7 52 69.2
BolC4t22244H Brassica oleracea HOM05D003075 ORTHO05D003430 5.2e-12 74.3 42 83.3
TWI14G0663 Tripterygium wilfordii HOM05D003075 ORTHO05D003430 5.2e-12 74.3 52 67.3
AT5G23600 Arabidopsis thaliana HOM05D003075 ORTHO05D003430 6.8e-12 73.9 42 83.3
MELO3C006196.2 Cucumis melo HOM05D003075 ORTHO05D003430 6.8e-12 73.9 43 83.7
Atru.chr5.294 Acer truncatum HOM05D003075 ORTHO05D003430 8.9e-12 73.6 51 68.6
CsaV3_3G009750 Cucumis sativus L. HOM05D003075 ORTHO05D003430 8.9e-12 73.6 43 81.4
Eucgr.D02463 Eucalyptus grandis HOM05D003075 ORTHO05D003430 8.9e-12 73.6 50 70.0
Thecc.01G378100 Theobroma cacao HOM05D003075 ORTHO05D003430 8.9e-12 73.6 69 56.5
CiPaw.09G176300 Carya illinoinensis HOM05D003075 ORTHO05D003430 1.5e-11 72.8 52 65.4
Duzib138G0067 Durio zibethinus HOM05D003075 ORTHO05D003430 1.5e-11 72.8 43 81.4
Phvul.010G084500 Phaseolus vulgaris HOM05D003075 ORTHO05D003430 1.5e-11 72.8 43 81.4
Sed0011315 Sechium edule HOM05D003075 ORTHO05D003430 1.5e-11 72.8 51 68.6
Sopen01g036960 Solanum pennellii HOM05D003075 ORTHO05D003430 1.5e-11 72.8 43 81.4
TPR.G9841 Trifolium pratense HOM05D003075 ORTHO05D003430 1.5e-11 72.8 43 81.4
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 2.0e-11 72.4 73 71.2
Glyma.17G254400 Glycine max HOM05D003075 ORTHO05D003430 2.0e-11 72.4 52 67.3
Nitab4.5_0000457g0150 Nicotiana tabacum HOM05D003075 ORTHO05D003430 2.0e-11 72.4 70 58.6
VMungo0331G0754 Vigna mungo HOM05D003075 ORTHO05D003430 2.0e-11 72.4 43 81.4
BcaC02g12230 Brassica carinata HOM05D003075 ORTHO05D003430 2.6e-11 72.0 42 81.0
C04p06190 Brassica napus HOM05D003075 ORTHO05D003430 2.6e-11 72.0 42 81.0
Gohir.A08G135300 Gossypium hirsutum HOM05D003075 ORTHO05D003430 2.6e-11 72.0 43 79.1
Gohir.D08G156200 Gossypium hirsutum HOM05D003075 ORTHO05D003430 2.6e-11 72.0 43 79.1
Gorai.004G162500 Gossypium raimondii HOM05D003075 ORTHO05D003430 2.6e-11 72.0 43 79.1
Medtr4g023500 Medicago truncatula HOM05D003075 ORTHO05D003430 2.6e-11 72.0 43 81.4
Potri.002G117000 Populus trichocarpa HOM05D003075 ORTHO05D003430 2.6e-11 72.0 43 81.4
Potri.013G094500 Populus trichocarpa HOM05D003075 ORTHO05D003430 2.6e-11 72.0 43 81.4
Sabra02G0114300 Salix brachista HOM05D003075 ORTHO05D003430 2.6e-11 72.0 68 82.4
TWI23G0023 Tripterygium wilfordii HOM05D003075 ORTHO05D003430 2.6e-11 72.0 51 68.6
BcaC02g12227 Brassica carinata HOM05D003075 ORTHO05D003430 3.4e-11 71.6 42 83.3
A05p05260 Brassica napus HOM05D003075 ORTHO05D003430 3.4e-11 71.6 42 83.3
BolC4t22246H Brassica oleracea HOM05D003075 ORTHO05D003430 3.4e-11 71.6 42 83.3
BraA05t19496Z Brassica rapa HOM05D003075 ORTHO05D003430 3.4e-11 71.6 42 83.3
Cc02_g24000 Coffea canephora HOM05D003075 ORTHO05D003430 3.4e-11 71.6 43 79.1
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 3.4e-11 71.6 43 79.1
Thhalv10019720m.g Eutrema salsugineum HOM05D003075 ORTHO05D003430 3.4e-11 71.6 43 79.1
Lj9A568T64 Lonicera japonica HOM05D003075 ORTHO05D003430 3.4e-11 71.6 43 79.1
Psat7g231560 Pisum sativum HOM05D003075 ORTHO05D003430 3.4e-11 71.6 45 75.6
GSVIVG01027679001 Vitis vinifera HOM05D003075 ORTHO05D003430 3.4e-11 71.6 43 76.7
Haze_16798 Corylus avellana HOM05D003075 ORTHO05D003430 4.4e-11 71.2 51 66.7
Lsat_1_v5_gn_7_9801 Lactuca sativa HOM05D003075 ORTHO05D003430 4.4e-11 71.2 43 76.7
MSTRG.4898 Avicennia marina HOM05D003075 ORTHO05D003430 5.7e-11 70.9 50 68.0
Dinv43697 Davidia involucrata HOM05D003075 ORTHO05D003430 5.7e-11 70.9 43 76.7
Duzib138G1594 Durio zibethinus HOM05D003075 ORTHO05D003430 5.7e-11 70.9 43 79.1
Gohir.D05G389001 Gossypium hirsutum HOM05D003075 ORTHO05D003430 5.7e-11 70.9 43 76.7
Gorai.007G000400 Gossypium raimondii HOM05D003075 ORTHO05D003430 5.7e-11 70.9 43 76.7
Gorai.008G298600 Gossypium raimondii HOM05D003075 ORTHO05D003430 5.7e-11 70.9 43 76.7
Gorai.009G455600 Gossypium raimondii HOM05D003075 ORTHO05D003430 5.7e-11 70.9 43 76.7
Lj7C530G5 Lonicera japonica HOM05D003075 ORTHO05D003430 5.7e-11 70.9 43 79.1
Nitab4.5_0004552g0030 Nicotiana tabacum HOM05D003075 ORTHO05D003430 5.7e-11 70.9 43 79.1
PGSC0003DMG402025960 Solanum tuberosum HOM05D003075 ORTHO05D003430 5.7e-11 70.9 42 81.0
SGA_v2.0_scaffold11G05572 Striga asiatica HOM05D003075 ORTHO05D003430 5.7e-11 70.9 76 53.9
SGA_v2.0_scaffold43G16486 Striga asiatica HOM05D003075 ORTHO05D003430 5.7e-11 70.9 69 55.1
GSVIVG01027678001 Vitis vinifera HOM05D003075 ORTHO05D003430 5.7e-11 70.9 43 76.7
CSS0007073 Camellia sinensis var. sinensis HOM05D003075 ORTHO05D003430 7.5e-11 70.5 75 56.0
FvH4_7g11590 Fragaria vesca HOM05D003075 ORTHO05D003430 7.5e-11 70.5 43 79.1
FAN01G2913 Fragaria x ananassa HOM05D003075 ORTHO05D003430 7.5e-11 70.5 43 79.1
FAN03G3200 Fragaria x ananassa HOM05D003075 ORTHO05D003430 7.5e-11 70.5 43 79.1
FAN06G2161 Fragaria x ananassa HOM05D003075 ORTHO05D003430 7.5e-11 70.5 43 79.1
FAN10G0718 Fragaria x ananassa HOM05D003075 ORTHO05D003430 7.5e-11 70.5 43 79.1
FAN10G3608 Fragaria x ananassa HOM05D003075 ORTHO05D003430 7.5e-11 70.5 43 79.1
Oeu003479.1 Olea europaea HOM05D003075 ORTHO05D003430 7.5e-11 70.5 52 65.4
THA.LOC104819580 Tarenaya hassleriana HOM05D003075 ORTHO05D003430 7.5e-11 70.5 70 62.9
ATR0733G147 Amborella trichopoda HOM05D003075 ORTHO05D003430 9.8e-11 70.1 50 66.0
CAN.G388.29 Capsicum annuum HOM05D003075 ORTHO05D003430 9.8e-11 70.1 43 79.1
Ca_17564_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 9.8e-11 70.1 50 68.0
Ca_19902_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 9.8e-11 70.1 51 66.7
ECA236G1357 Erigeron canadensis HOM05D003075 ORTHO05D003430 9.8e-11 70.1 43 76.7
Prupe.2G143900 Prunus persica HOM05D003075 ORTHO05D003430 9.8e-11 70.1 69 71.0
Lj3g0026412 Lotus japonicus HOM05D003075 ORTHO05D003430 1.3e-10 69.7 45 73.3
PGR042G3567 Punica granatum HOM05D003075 ORTHO05D003430 1.3e-10 69.7 69 55.1
arahy.Tifrunner.gnm1.ann1.7U8F1S Arachis hypogaea HOM05D003075 ORTHO05D003430 1.7e-10 69.3 43 76.7
arahy.Tifrunner.gnm1.ann1.G5NZ7A Arachis hypogaea HOM05D003075 ORTHO05D003430 1.7e-10 69.3 43 76.7
arahy.Tifrunner.gnm1.ann1.LQNG80 Arachis hypogaea HOM05D003075 ORTHO05D003430 1.7e-10 69.3 43 76.7
CANSAT35G1223 Cannabis sativa HOM05D003075 ORTHO05D003430 1.7e-10 69.3 43 74.4
Cfa001744 Carpinus fangiana HOM05D003075 ORTHO05D003430 1.7e-10 69.3 51 64.7
MD00G1100000 Malus domestica HOM05D003075 ORTHO05D003430 1.7e-10 69.3 43 76.7
MD07G1120400 Malus domestica HOM05D003075 ORTHO05D003430 1.7e-10 69.3 43 76.7
Cpa.g.sc11.49 Carica papaya HOM05D003075 ORTHO05D003430 2.2e-10 68.9 43 72.1
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 2.2e-10 68.9 50 66.0
HanXRQChr04g0122761 Helianthus annuus HOM05D003075 ORTHO05D003430 2.2e-10 68.9 43 74.4
QL08p052672 Quercus lobata HOM05D003075 ORTHO05D003430 2.2e-10 68.9 43 74.4
TAR375G0194 Trochodendron aralioides HOM05D003075 ORTHO05D003430 2.2e-10 68.9 51 64.7
Ca_19890_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 2.8e-10 68.6 43 76.7
Ca_29890_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 2.8e-10 68.6 43 76.7
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 2.8e-10 68.6 50 64.0
RcHm_v2.0_Chr1g0350011 Rosa chinensis HOM05D003075 ORTHO05D003430 2.8e-10 68.6 43 74.4
Solyc01g091210.3 Solanum lycopersicum HOM05D003075 ORTHO05D003430 2.8e-10 68.6 41 80.5
Aa31LG1G26840 Aethionema arabicum HOM05D003075 ORTHO05D003430 3.7e-10 68.2 43 74.4
Migut.N01626 Erythranthe guttata HOM05D003075 ORTHO05D003430 3.7e-10 68.2 42 76.2
FAN06G4578 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.7e-10 68.2 43 76.7
Manes.01G266500 Manihot esculenta HOM05D003075 ORTHO05D003430 3.7e-10 68.2 43 74.4
SalBow5G2038 Salvia bowleyana HOM05D003075 ORTHO05D003430 3.7e-10 68.2 71 50.7
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 6.3e-10 67.4 43 74.4
Gohir.D01G222050 Gossypium hirsutum HOM05D003075 ORTHO05D003430 8.3e-10 67.0 43 74.4
Gorai.002G268800 Gossypium raimondii HOM05D003075 ORTHO05D003430 8.3e-10 67.0 43 74.4
Lsat_1_v5_gn_8_86100 Lactuca sativa HOM05D003075 ORTHO05D003430 8.3e-10 67.0 43 72.1
Nn4g26370 Nelumbo nucifera HOM05D003075 ORTHO05D003430 8.3e-10 67.0 69 55.1
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 8.3e-10 67.0 41 75.6
Zm00001eb377990 Zea mays HOM05D003075 ORTHO05D003430 8.3e-10 67.0 50 62.0
Aqoxy7G00659 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 1.1e-09 66.6 51 58.8
Rhsim07G0028400 Rhododendron simsii HOM05D003075 ORTHO05D003430 1.1e-09 66.6 43 69.8
Os06g0134050 Oryza sativa ssp. japonica HOM05D003075 ORTHO05D003430 1.4e-09 66.2 50 64.0
Nn1g01143 Nelumbo nucifera HOM05D003075 ORTHO05D003430 1.8e-09 65.9 43 69.8
vmacro13410 Vaccinium macrocarpon HOM05D003075 ORTHO05D003430 1.8e-09 65.9 42 69.0
MBI12_g31643_MAGBIO Magnolia biondii HOM05D003075 ORTHO05D003430 2.4e-09 65.5 50 62.0
Medtr4g084670 Medicago truncatula HOM05D003075 ORTHO05D003430 3.1e-09 65.1 69 50.7
PSO478G3315 Papaver somniferum HOM05D003075 ORTHO05D003430 4.1e-09 64.7 50 60.0
Lalb_Chr12g0208211 Lupinus albus HOM05D003075 ORTHO05D003430 7.0e-09 63.9 42 71.4
SalBow7G2967 Salvia bowleyana HOM05D003075 ORTHO05D003430 7.0e-09 63.9 70 50.0
Hund17026 Selenicereus undatus HOM05D003075 ORTHO05D003430 1.6e-08 62.8 42 66.7
Glyma.17G199600 Glycine max HOM05D003075 ORTHO05D003430 2.0e-08 62.4 92 45.7
Sc23g0003640 Simmondsia chinensis HOM05D003075 ORTHO05D003430 2.0e-08 62.4 43 67.4
Aqoxy5G02670 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 2.7e-08 62.0 42 64.3
AUR62004205 Chenopodium quinoa HOM05D003075 ORTHO05D003430 2.7e-08 62.0 55 52.7
AUR62013643 Chenopodium quinoa HOM05D003075 ORTHO05D003430 1.3e-07 59.7 55 50.9
AUR62018381 Chenopodium quinoa HOM05D003075 ORTHO05D003430 1.3e-07 59.7 55 50.9
CDE09G0478 Ceratophyllum demersum HOM05D003075 ORTHO05D003430 5.0e-07 57.8 41 65.9
AUR62043207 Chenopodium quinoa HOM05D003075 ORTHO05D003430 5.0e-07 57.8 42 61.9
EL10Ac1g00881 Beta vulgaris HOM05D003075 ORTHO05D003430 1.5e-06 56.2 55 47.3
HPP92_008230 Vanilla planifolia HOM05D003075 ORTHO05D003430 2.5e-06 55.5 50 54.0
Hma1.2p1_0446F.1_g154650 Hydrangea macrophylla HOM05D003075 ORTHO05D003430 3.3e-06 55.1 43 60.5
DCAR_008556 Daucus carota HOM05D003075 ORTHO05D003430 5.6e-06 54.3 41 61.0
PSO135G0225 Papaver somniferum HOM05D003075 ORTHO05D003430 9.5e-06 53.5 50 54.0
Peaxi162Scf00013g03226 Petunia axillaris HOM05D003075 ORTHO05D003430 9.5e-06 53.5 34 73.5


User provided reference genes

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