Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 1.1e-80 303.5 193 100.0
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 1.1e-80 303.5 193 100.0
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 2.0e-77 292.7 167 92.2
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 1.7e-76 289.7 194 93.8
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 3.8e-76 288.5 167 96.4
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 1.6e-58 229.9 197 76.6
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 1.3e-55 220.3 170 71.8
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 4.8e-55 218.4 171 71.9
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 3.8e-52 208.8 165 73.3
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 1.9e-51 206.5 149 75.8
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 5.5e-51 204.9 168 68.5
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 9.4e-51 204.1 146 72.6
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 3.0e-49 199.1 169 66.9
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 3.0e-49 199.1 163 68.7
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.6e-48 196.1 146 71.9
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 3.4e-48 195.7 146 72.6
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 2.4e-46 189.5 167 66.5
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 3.5e-45 185.7 146 69.9
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.2e-42 177.2 164 59.8
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 5.9e-37 158.3 144 61.1
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 1.0e-36 157.5 141 61.7
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.7e-36 156.8 146 59.6
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 2.3e-36 156.4 163 54.6
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 4.2e-35 152.1 138 57.2
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 9.5e-35 151.0 128 61.7
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.2e-34 150.6 143 56.6
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 2.8e-34 149.4 128 60.2
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 2.8e-34 149.4 129 62.8
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 4.7e-34 148.7 148 56.8
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.0e-33 147.5 152 55.3
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.0e-33 147.5 131 59.5
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 1.8e-33 146.7 138 55.8
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 1.8e-33 146.7 130 60.0
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 3.0e-33 146.0 141 56.0
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 4.0e-33 145.6 130 58.5
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 8.9e-33 144.4 144 54.9
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 1.2e-32 144.1 144 56.2
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 1.5e-32 143.7 137 56.9
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.5e-32 143.7 137 56.9
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.5e-32 143.7 123 61.0
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 2.0e-32 143.3 130 57.7
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 3.4e-32 142.5 132 56.8
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 3.4e-32 142.5 132 56.8
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 4.4e-32 142.1 123 62.6
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 7.5e-32 141.4 162 52.5
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 9.8e-32 141.0 122 58.2
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 1.7e-31 140.2 126 57.9
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 2.2e-31 139.8 122 58.2
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 2.8e-31 139.4 143 53.8
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 2.8e-31 139.4 136 59.6
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 2.8e-31 139.4 124 58.9
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 2.8e-31 139.4 124 58.9
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 4.9e-31 138.7 146 52.7
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 6.3e-31 138.3 131 55.7
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 8.3e-31 137.9 160 48.1
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 8.3e-31 137.9 146 52.1
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.1e-30 137.5 147 50.3
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 1.4e-30 137.1 141 52.5
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 1.4e-30 137.1 141 51.1
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 1.8e-30 136.7 140 55.7
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 3.2e-30 136.0 167 52.7
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 3.2e-30 136.0 167 47.9
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 5.4e-30 135.2 123 56.9
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 9.2e-30 134.4 144 53.5
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 9.2e-30 134.4 141 53.9
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 1.2e-29 134.0 167 46.7
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 1.2e-29 134.0 129 53.5
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.2e-29 134.0 146 50.0
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 1.6e-29 133.7 146 49.3
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 2.0e-29 133.3 140 52.1
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 2.7e-29 132.9 119 60.5
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 2.7e-29 132.9 195 46.7
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 2.7e-29 132.9 144 50.7
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 2.7e-29 132.9 127 53.5
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 2.7e-29 132.9 148 50.0
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 5.9e-29 131.7 139 50.4
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 5.9e-29 131.7 147 52.4
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 1.0e-28 131.0 151 48.3
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.7e-28 130.2 151 48.3
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 1.7e-28 130.2 130 53.8
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 1.7e-28 130.2 130 53.8
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 2.3e-28 129.8 144 50.0
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 2.9e-28 129.4 144 50.0
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 3.9e-28 129.0 128 56.2
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 6.6e-28 128.3 148 52.0
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 1.1e-27 127.5 144 50.0
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.5e-27 127.1 131 56.5
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 2.5e-27 126.3 135 54.8
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 3.3e-27 125.9 142 47.2
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 3.3e-27 125.9 143 52.4
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 5.6e-27 125.2 122 54.9
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 7.3e-27 124.8 101 66.3
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 9.5e-27 124.4 124 51.6
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 1.6e-26 123.6 105 63.8
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 3.6e-26 122.5 144 50.7
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 6.1e-26 121.7 139 50.4
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 6.1e-26 121.7 144 51.4
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 8.0e-26 121.3 105 60.0
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 8.0e-26 121.3 107 60.7
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 1.0e-25 120.9 107 62.6
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 3.1e-25 119.4 176 42.0
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 3.1e-25 119.4 115 54.8
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 3.1e-25 119.4 115 54.8
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 3.1e-25 119.4 115 54.8
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 3.1e-25 119.4 115 54.8
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 3.1e-25 119.4 115 54.8
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 3.1e-25 119.4 115 54.8
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 5.2e-25 118.6 118 54.2
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 5.2e-25 118.6 115 54.8
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 8.9e-25 117.9 132 47.7
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 1.2e-24 117.5 118 55.9
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 7.5e-24 114.8 175 41.7
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 7.5e-24 114.8 124 50.8
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 9.8e-24 114.4 138 49.3
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 4.9e-23 112.1 116 54.3
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.1e-22 110.9 118 50.0
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.1e-22 109.0 130 49.2
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 4.1e-22 109.0 130 50.0
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.7e-21 106.3 130 48.5
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.0e-20 104.4 130 46.9
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 1.7e-20 103.6 164 39.0
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 5.0e-20 102.1 130 44.6
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.5e-19 100.5 126 49.2
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 4.3e-19 99.0 128 44.5
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 2.3e-17 93.2 138 40.6
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 4.0e-17 92.4 137 40.1
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 7.5e-16 88.2 167 35.3
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 3.7e-15 85.9 107 44.9
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 6.4e-15 85.1 86 60.5
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 2.7e-13 79.7 114 42.1
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 1.3e-12 77.4 126 38.9
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 5.1e-12 75.5 167 29.9
AL225U10020 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 8.6e-12 74.7 57 66.7
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 1.5e-11 73.9 134 35.1
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 9.5e-11 71.2 120 38.3
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 1.2e-10 70.9 116 43.1
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 1.7e-07 60.5 116 31.0
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 1.1e-06 57.8 105 36.2
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 7.1e-06 55.1 52 55.8
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 7.1e-06 55.1 63 42.9


User provided reference genes

Program Settings