Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 8.5e-279 963.0 471 100.0
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 2.0e-264 915.2 471 95.5
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 2.0e-264 915.2 471 95.5
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 1.6e-261 905.6 475 94.7
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 1.7e-255 885.6 475 93.5
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 5.0e-239 830.9 488 86.7
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 2.3e-231 805.4 501 82.8
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 6.8e-228 793.9 498 82.5
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 3.5e-224 781.6 501 80.6
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 2.4e-217 758.8 492 78.9
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 2.0e-216 755.7 496 79.0
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 1.3e-210 736.5 501 77.4
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 1.1e-193 680.2 524 68.9
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 1.6e-184 649.8 515 66.8
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 5.3e-172 608.2 484 62.2
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 1.7e-170 603.2 507 61.5
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 1.1e-169 600.5 511 61.3
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 5.5e-169 598.2 484 61.6
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 5.5e-169 598.2 494 62.1
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 2.1e-168 596.3 508 60.6
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 2.1e-168 596.3 508 60.6
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 4.6e-168 595.1 496 61.1
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 4.6e-168 595.1 502 60.0
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 1.0e-167 594.0 495 61.6
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 1.3e-167 593.6 448 64.3
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 8.7e-167 590.9 506 60.3
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 2.5e-166 589.3 487 63.0
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 4.3e-166 588.6 457 65.6
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 1.3e-165 587.0 496 60.7
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 1.3e-165 587.0 452 63.7
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 2.2e-165 586.3 437 66.1
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 3.7e-165 585.5 499 59.7
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 6.3e-165 584.7 502 60.8
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 1.1e-164 583.9 446 66.4
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 1.8e-164 583.2 523 58.7
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 4.1e-164 582.0 502 59.6
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 4.1e-164 582.0 432 66.7
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 6.9e-164 581.3 449 66.4
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 6.9e-164 581.3 511 60.1
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 9.0e-164 580.9 508 60.0
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 1.2e-163 580.5 522 57.1
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 1.2e-163 580.5 488 62.3
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 4.5e-163 578.6 492 59.1
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 5.9e-163 578.2 500 59.2
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 1.3e-162 577.0 444 64.4
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 1.3e-162 577.0 506 58.7
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 2.9e-162 575.9 476 62.0
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 3.8e-162 575.5 475 62.1
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 3.8e-162 575.5 475 61.9
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 5.0e-162 575.1 475 61.9
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 6.5e-162 574.7 467 62.3
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 8.5e-162 574.3 498 59.6
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 1.6e-160 570.1 483 59.8
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 3.6e-160 568.9 413 68.5
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 4.6e-160 568.5 433 65.6
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 6.1e-160 568.2 433 65.4
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 7.9e-160 567.8 465 64.1
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 3.0e-159 565.8 453 63.4
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 1.1e-158 563.9 431 65.7
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 1.5e-158 563.5 506 58.1
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 1.5e-158 563.5 447 63.8
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 1.9e-158 563.1 495 58.4
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 2.5e-158 562.8 459 63.4
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 3.3e-158 562.4 495 59.4
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 4.3e-158 562.0 441 64.4
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 2.8e-157 559.3 514 57.8
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 1.8e-156 556.6 446 62.1
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 4.1e-156 555.4 440 63.4
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 1.2e-155 553.9 499 57.9
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 1.5e-155 553.5 478 59.2
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.5e-155 553.5 492 58.3
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 3.4e-155 552.4 366 73.0
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 1.0e-154 550.8 443 62.1
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 1.4e-153 547.0 382 69.9
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 3.2e-153 545.8 494 58.1
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 1.8e-151 540.0 446 61.2
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 2.3e-151 539.7 451 61.9
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 4.4e-150 535.4 355 70.4
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 7.4e-150 534.6 477 57.9
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 1.3e-149 533.9 508 56.7
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 7.0e-148 528.1 501 55.5
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 7.0e-148 528.1 465 57.8
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 2.0e-147 526.6 539 53.6
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 4.7e-144 515.4 471 56.5
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 1.0e-143 514.2 433 60.7
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 5.7e-142 508.4 481 55.9
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 1.4e-140 503.8 441 60.1
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 4.1e-140 502.3 427 59.3
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 5.3e-140 501.9 428 60.3
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 2.9e-138 496.1 441 56.9
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 3.2e-137 492.7 461 56.8
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 1.8e-135 486.9 643 45.1
CDE06G1994 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 1.1e-132 477.6 459 54.7
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 3.8e-130 469.2 382 63.9
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 4.0e-127 459.1 411 58.9
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 7.0e-108 395.2 255 71.0
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 2.1e-104 383.6 339 55.2
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 4.7e-88 329.3 238 66.4
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 4.3e-81 306.2 193 72.5
Pp3c5_3810 Physcomitrium patens HOM05D006344 ORTHO05D007744 3.5e-75 286.6 481 37.0
SEGI_37248 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 2.8e-72 276.9 224 56.7
Peaxi162Scf00103g00912 Petunia axillaris HOM05D006344 ORTHO05D007744 6.2e-72 275.8 317 50.2
PGSC0003DMG400026373 Solanum tuberosum HOM05D006344 ORTHO05D007744 1.1e-71 275.0 242 61.2
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 9.0e-71 271.9 182 68.7
Solyc10g037900.1 Solanum lycopersicum HOM05D006344 ORTHO05D007744 4.5e-70 269.6 248 60.5
CAN.G768.2 Capsicum annuum HOM05D006344 ORTHO05D007744 2.2e-69 267.3 269 55.4
PGSC0003DMG400003447 Solanum tuberosum HOM05D006344 ORTHO05D007744 1.4e-60 238.0 162 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05D006344 ORTHO05D007744 2.3e-58 230.7 559 29.5
Mapoly0089s0048 Marchantia polymorpha HOM05D006344 ORTHO05D007744 2.8e-56 223.8 582 30.2
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 8.7e-50 202.2 447 30.2
Atru.chr5.115 Acer truncatum HOM05D006344 ORTHO05D007744 6.3e-48 196.1 179 56.4
Lj9A555T32 Lonicera japonica HOM05D006344 ORTHO05D007744 1.2e-38 165.2 123 70.7
SEGI_14599 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 1.5e-38 164.9 198 46.0
SMO356G0573 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 1.5e-33 148.3 362 28.5
SEGI_30390 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 4.7e-27 126.7 129 50.4
HanXRQChr09g0257941 Helianthus annuus HOM05D006344 ORTHO05D007744 2.6e-22 110.9 108 54.6
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 2.2e-21 107.8 60 78.3
CDE06G0422 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 4.4e-17 93.6 58 65.5
CBR_g48168 Chara braunii HOM05D006344 ORTHO05D007744 7.0e-15 86.3 154 33.1
BcaB08g35012 Brassica carinata HOM05D006344 ORTHO05D007744 1.3e-13 82.0 40 92.5
Cre16.g684900 Chlamydomonas reinhardtii HOM05D006344 ORTHO05D007744 4.7e-11 73.6 154 35.7
Peaxi162Scf00562g00611 Petunia axillaris HOM05D006344 ORTHO05D007744 4.7e-11 73.6 84 53.6
COL.COLO4_10413 Corchorus olitorius HOM05D006344 ORTHO05D007744 8.0e-11 72.8 64 59.4
Peaxi162Scf00562g00069 Petunia axillaris HOM05D006344 ORTHO05D007744 8.0e-11 72.8 133 36.8
CBR_g48169 Chara braunii HOM05D006344 ORTHO05D007744 1.5e-09 68.6 133 32.3
BcaC02g11397 Brassica carinata HOM05D006344 ORTHO05D007744 4.1e-07 60.5 40 75.0
HanXRQChr01g0015371 Helianthus annuus HOM05D000263 ORTHO05D000213 4.1e-07 60.5 42 59.5


User provided reference genes

Program Settings