Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p04930 Brassica napus HOM05D007257 ORTHO05D008924 2.4e-50 201.8 101 100.0
BcaC02g12345 Brassica carinata HOM05D007257 ORTHO05D008924 5.5e-50 200.7 101 99.0
BolC4t22123H Brassica oleracea HOM05D007257 ORTHO05D008924 1.6e-49 199.1 101 98.0
A05p04160 Brassica napus HOM05D007257 ORTHO05D008924 4.3e-47 191.0 101 95.0
BraA05t19402Z Brassica rapa HOM05D007257 ORTHO05D008924 4.3e-47 191.0 101 95.0
Sp4g26100 Schrenkiella parvula HOM05D007257 ORTHO05D008924 9.6e-39 163.3 101 84.2
CARHR139190 Cardamine hirsuta HOM05D007257 ORTHO05D008924 8.2e-38 160.2 101 81.2
Carub.0004s2657 Capsella rubella HOM05D007257 ORTHO05D008924 1.8e-37 159.1 101 79.2
BcaB02g08925 Brassica carinata HOM05D007257 ORTHO05D008924 3.4e-36 154.8 101 80.2
AL4G42890 Arabidopsis lyrata HOM05D007257 ORTHO05D008924 2.2e-35 152.1 102 77.5
AT2G44010 Arabidopsis thaliana HOM05D007257 ORTHO05D008924 2.2e-35 152.1 102 77.5
Thhalv10001750m.g Eutrema salsugineum HOM05D007257 ORTHO05D008924 8.4e-35 150.2 101 78.2
BraA03t11669Z Brassica rapa HOM05D007257 ORTHO05D008924 6.9e-29 130.6 101 68.3
BcaC01g05191 Brassica carinata HOM05D007257 ORTHO05D008924 2.0e-28 129.0 102 68.6
C03p29370 Brassica napus HOM05D007257 ORTHO05D008924 2.6e-28 128.6 102 68.6
BolC3t15284H Brassica oleracea HOM05D007257 ORTHO05D008924 2.6e-28 128.6 102 68.6
BcaC01g05192 Brassica carinata HOM05D007257 ORTHO05D008924 3.9e-24 114.8 102 65.7
Aa31LG1G25680 Aethionema arabicum HOM05D007257 ORTHO05D008924 7.4e-23 110.5 123 51.2
BcaB01g03336 Brassica carinata HOM05D007257 ORTHO05D008924 7.4e-23 110.5 102 61.8
BcaB01g03345 Brassica carinata HOM05D007257 ORTHO05D008924 7.4e-23 110.5 102 61.8
AL5G42000 Arabidopsis lyrata HOM05D007257 ORTHO05D008924 1.4e-21 106.3 126 50.0
AT3G59880 Arabidopsis thaliana HOM05D007257 ORTHO05D008924 4.1e-21 104.8 126 50.0
Carub.0005s2662 Capsella rubella HOM05D007257 ORTHO05D008924 4.1e-21 104.8 118 51.7
Sp5g03270 Schrenkiella parvula HOM05D007257 ORTHO05D008924 7.7e-20 100.5 126 50.8
CARHR170210 Cardamine hirsuta HOM05D007257 ORTHO05D008924 2.9e-19 98.6 123 48.8
BcaC07g40438 Brassica carinata HOM05D007257 ORTHO05D008924 4.2e-18 94.7 126 48.4
BcaC07g40552 Brassica carinata HOM05D007257 ORTHO05D008924 5.5e-18 94.4 126 46.0
A09p52160 Brassica napus HOM05D007257 ORTHO05D008924 5.5e-18 94.4 126 46.0
C08p34830 Brassica napus HOM05D007257 ORTHO05D008924 5.5e-18 94.4 126 46.0
BraA09t40647Z Brassica rapa HOM05D007257 ORTHO05D008924 5.5e-18 94.4 126 46.0
Thhalv10006503m.g Eutrema salsugineum HOM05D007257 ORTHO05D008924 1.2e-17 93.2 129 48.8
BolC8t51085H Brassica oleracea HOM05D007257 ORTHO05D008924 2.1e-17 92.4 126 45.2
THA.LOC104827561 Tarenaya hassleriana HOM05D007257 ORTHO05D008924 9.7e-15 83.6 110 42.7
Atru.chr3.1975 Acer truncatum HOM05D007257 ORTHO05D008924 2.2e-11 72.4 116 44.0
Ciclev10022922m.g Citrus clementina HOM05D007257 ORTHO05D008924 1.5e-10 69.7 116 41.4
QL10p064610 Quercus lobata HOM05D007257 ORTHO05D008924 1.9e-10 69.3 118 37.3
QL10p065732 Quercus lobata HOM05D007257 ORTHO05D008924 1.9e-10 69.3 118 37.3
Peaxi162Scf00169g00094 Petunia axillaris HOM05D007257 ORTHO05D008924 2.5e-10 68.9 125 37.6
PGR042G0806 Punica granatum HOM05D007257 ORTHO05D008924 7.2e-10 67.4 125 37.6
Gohir.D09G190900 Gossypium hirsutum HOM05D007257 ORTHO05D008924 2.1e-09 65.9 114 37.7
Gorai.006G213700 Gossypium raimondii HOM05D007257 ORTHO05D008924 2.1e-09 65.9 114 37.7
Gohir.A09G196300 Gossypium hirsutum HOM05D007257 ORTHO05D008924 2.7e-09 65.5 114 37.7
Thecc.05G001300 Theobroma cacao HOM05D007257 ORTHO05D008924 2.7e-09 65.5 116 37.1
Lj1g0006483 Lotus japonicus HOM05D007257 ORTHO05D008924 3.6e-09 65.1 116 38.8
Ah.07g203290 Amaranthus hybridus HOM05D007257 ORTHO05D008924 1.0e-08 63.5 122 34.4
Lalb_Chr11g0068971 Lupinus albus HOM05D007257 ORTHO05D008924 3.0e-08 62.0 115 36.5
Manes.01G009800 Manihot esculenta HOM05D007257 ORTHO05D008924 3.0e-08 62.0 117 37.6
Lalb_Chr12g0202631 Lupinus albus HOM05D007257 ORTHO05D008924 4.0e-08 61.6 107 36.4
vmacro00725 Vaccinium macrocarpon HOM05D007257 ORTHO05D008924 5.2e-08 61.2 129 34.9
TWI15G0669 Tripterygium wilfordii HOM05D007257 ORTHO05D008924 6.7e-08 60.8 124 37.1
Aa31LG10G14120 Aethionema arabicum HOM05D007257 ORTHO05D008924 8.8e-08 60.5 114 36.8
Haze_11125 Corylus avellana HOM05D007257 ORTHO05D008924 1.1e-07 60.1 117 39.3
SGA_v2.0_scaffold25G11017 Striga asiatica HOM05D007257 ORTHO05D008924 1.1e-07 60.1 102 41.2
AUR62002488 Chenopodium quinoa HOM05D007257 ORTHO05D008924 2.0e-07 59.3 100 36.0
Manes.05G207200 Manihot esculenta HOM05D007257 ORTHO05D008924 2.0e-07 59.3 99 39.4
SalBow3G3102 Salvia bowleyana HOM05D007257 ORTHO05D008924 2.0e-07 59.3 113 36.3
SGA_v2.0_scaffold12G06221 Striga asiatica HOM05D007257 ORTHO05D008924 2.0e-07 59.3 110 33.6
MELO3C008506.2 Cucumis melo HOM05D007257 ORTHO05D008924 3.3e-07 58.5 113 37.2
CsaV3_2G011240 Cucumis sativus L. HOM05D007257 ORTHO05D008924 3.3e-07 58.5 113 36.3
Nitab4.5_0000160g0050 Nicotiana tabacum HOM05D007257 ORTHO05D008924 3.3e-07 58.5 108 37.0
CiPaw.01G202100 Carya illinoinensis HOM05D007257 ORTHO05D008924 5.7e-07 57.8 118 33.9
Glyma.04G203100 Glycine max HOM05D007257 ORTHO05D008924 5.7e-07 57.8 121 33.9
Glyma.06G162400 Glycine max HOM05D007257 ORTHO05D008924 5.7e-07 57.8 123 33.3
Oeu018062.1 Olea europaea HOM05D007257 ORTHO05D008924 7.5e-07 57.4 113 31.0
COL.COLO4_14410 Corchorus olitorius HOM05D007257 ORTHO05D008924 2.8e-06 55.5 120 32.5
TPR.G7792 Trifolium pratense HOM05D007257 ORTHO05D008924 2.8e-06 55.5 109 36.7
Psat5g055880 Pisum sativum HOM05D007257 ORTHO05D008924 4.8e-06 54.7 109 35.8
Rhsim09G0003000 Rhododendron simsii HOM05D007257 ORTHO05D008924 6.3e-06 54.3 118 33.1
EL10Ac3g06173 Beta vulgaris HOM05D007257 ORTHO05D008924 8.2e-06 53.9 130 30.0


User provided reference genes

Program Settings