Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 2.2e-111 405.6 202 100.0
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 1.5e-99 366.3 182 100.0
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 1.5e-99 366.3 182 100.0
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 5.7e-99 364.4 184 97.3
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 8.0e-93 344.0 173 96.5
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 4.2e-86 321.6 208 82.2
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 1.0e-84 317.0 189 84.7
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 4.0e-84 315.1 196 82.1
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 2.0e-83 312.8 190 84.7
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 9.8e-83 310.5 189 83.6
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 2.8e-82 308.9 190 83.7
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 8.3e-82 307.4 189 82.5
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 8.3e-82 307.4 189 82.5
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 1.8e-81 306.2 193 80.8
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 1.2e-69 266.9 180 73.3
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 2.8e-69 265.8 195 70.3
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 6.8e-68 261.2 185 69.2
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 8.9e-68 260.8 169 71.0
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.2e-67 260.4 198 66.2
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 2.0e-67 259.6 184 69.0
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 3.4e-67 258.8 189 73.5
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 3.4e-67 258.8 190 66.3
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 4.4e-67 258.5 186 67.2
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 4.4e-67 258.5 168 73.2
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 4.4e-67 258.5 185 68.6
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 5.8e-67 258.1 188 66.5
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 7.5e-67 257.7 184 67.4
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 1.3e-66 256.9 185 68.1
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 1.7e-66 256.5 183 68.9
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 2.9e-66 255.8 205 63.4
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.9e-66 255.8 182 65.9
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 4.9e-66 255.0 183 69.4
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 6.4e-66 254.6 191 63.9
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 6.4e-66 254.6 184 66.8
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 8.3e-66 254.2 187 65.2
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 8.3e-66 254.2 198 64.1
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 8.3e-66 254.2 170 71.2
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 8.3e-66 254.2 184 67.4
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 1.1e-65 253.8 182 66.5
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.1e-65 253.8 188 64.4
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.4e-65 253.4 196 65.8
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 1.4e-65 253.4 185 67.0
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 1.4e-65 253.4 184 64.7
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 2.4e-65 252.7 172 70.3
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 2.4e-65 252.7 181 67.4
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.4e-65 252.7 182 65.4
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 3.2e-65 252.3 177 69.5
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 4.1e-65 251.9 186 65.6
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 4.1e-65 251.9 186 65.6
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.1e-65 251.9 183 66.1
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 4.1e-65 251.9 183 66.1
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 4.1e-65 251.9 194 63.4
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 5.4e-65 251.5 183 66.1
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 7.0e-65 251.1 180 68.3
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 9.2e-65 250.8 187 64.7
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 9.2e-65 250.8 179 66.5
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 1.2e-64 250.4 187 64.2
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 1.2e-64 250.4 167 73.1
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 2.7e-64 249.2 188 64.4
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 2.7e-64 249.2 189 65.6
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 2.7e-64 249.2 178 67.4
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 3.5e-64 248.8 170 68.8
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 3.5e-64 248.8 191 63.4
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 3.5e-64 248.8 174 67.2
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 4.6e-64 248.4 193 63.7
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 4.6e-64 248.4 173 69.9
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 7.8e-64 247.7 184 62.5
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 7.8e-64 247.7 171 68.4
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 7.8e-64 247.7 174 66.7
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 1.0e-63 247.3 183 65.6
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.0e-63 247.3 191 63.4
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 1.3e-63 246.9 189 62.4
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.7e-63 246.5 183 65.6
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 1.7e-63 246.5 176 69.3
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 2.3e-63 246.1 174 65.5
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 2.3e-63 246.1 178 66.9
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 3.9e-63 245.4 191 62.3
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 5.0e-63 245.0 188 63.8
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 6.6e-63 244.6 175 67.4
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 8.6e-63 244.2 170 69.4
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 8.6e-63 244.2 171 67.3
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 1.5e-62 243.4 171 67.3
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.5e-62 243.4 191 61.8
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.9e-62 243.0 170 69.4
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 2.5e-62 242.7 191 62.8
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 3.3e-62 242.3 174 67.2
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 5.6e-62 241.5 172 67.4
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 9.5e-62 240.7 175 65.7
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 9.5e-62 240.7 171 66.1
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 1.2e-61 240.4 192 60.4
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 1.6e-61 240.0 167 65.9
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 2.1e-61 239.6 172 67.4
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 4.7e-61 238.4 179 65.9
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 1.1e-60 237.3 177 65.0
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 1.4e-60 236.9 172 62.2
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 1.4e-60 236.9 194 61.3
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 1.5e-59 233.4 165 66.7
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 3.4e-59 232.3 174 64.9
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 4.4e-59 231.9 172 65.1
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.0e-55 220.7 203 55.2
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.0e-55 220.7 189 57.1
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.3e-55 219.5 163 63.8
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 6.6e-55 218.0 169 61.5
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 4.3e-54 215.3 163 66.3
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 2.8e-53 212.6 184 58.2
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 2.0e-51 206.5 123 74.8
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 3.5e-48 195.7 150 63.3
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 4.6e-48 195.3 169 58.0
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 7.8e-48 194.5 181 53.6
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.0e-47 194.1 123 74.8
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.3e-47 193.7 122 74.6
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 6.6e-47 191.4 149 61.7
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 5.6e-46 188.3 165 57.6
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 2.1e-45 186.4 173 57.2
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 3.1e-44 182.6 146 60.3
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 6.8e-44 181.4 194 53.1
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 3.4e-43 179.1 149 59.7
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 2.7e-40 169.5 123 68.3
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 4.3e-38 162.2 189 52.4
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 4.3e-38 162.2 189 52.4
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 4.0e-36 155.6 110 68.2
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 9.9e-35 151.0 184 47.8
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 1.3e-34 150.6 128 53.1
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 1.6e-32 143.7 131 55.0
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 2.1e-32 143.3 151 49.0
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 4.6e-32 142.1 166 50.0
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 1.0e-31 141.0 87 83.9
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 2.5e-30 136.3 92 70.7
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 9.6e-30 134.4 84 76.2
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 6.4e-26 121.7 167 43.1
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 2.4e-25 119.8 61 98.4
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 3.2e-25 119.4 166 44.6
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 3.2e-25 119.4 149 47.7
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 4.5e-19 99.0 114 40.4
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.1e-17 94.4 51 78.4
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 3.2e-09 66.2 55 50.9


User provided reference genes

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