Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 1.8e-58 229.2 125 100.0
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 9.7e-57 223.4 122 100.0
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 9.7e-57 223.4 122 100.0
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 2.2e-56 222.2 122 99.2
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 1.4e-55 219.5 122 98.4
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 7.0e-55 217.2 120 98.3
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-54 216.5 122 95.9
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.3e-53 213.0 123 94.3
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 2.2e-53 212.2 122 96.7
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 2.9e-53 211.8 124 94.4
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 3.8e-53 211.5 123 95.1
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.5e-52 209.5 122 95.1
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.5e-52 209.5 116 97.4
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.5e-52 209.5 122 95.1
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.9e-52 209.1 123 95.1
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 4.2e-52 208.0 121 95.9
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 9.4e-52 206.8 122 94.3
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.2e-51 206.5 122 93.4
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.6e-51 204.9 122 91.0
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 2.6e-49 198.7 122 91.8
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 4.4e-49 198.0 121 91.7
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 3.5e-46 188.3 117 88.9
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.3e-45 186.4 120 84.2
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 2.2e-45 185.7 122 81.1
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.2e-45 185.7 122 83.6
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.9e-45 185.3 121 81.0
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 3.8e-45 184.9 120 82.5
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 3.8e-45 184.9 117 83.8
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.5e-44 183.0 113 85.0
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 7.2e-44 180.6 121 80.2
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 9.4e-44 180.3 113 83.2
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.2e-43 179.9 120 80.8
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 1.6e-43 179.5 117 82.1
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 2.1e-43 179.1 120 80.0
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 3.6e-43 178.3 122 85.2
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.6e-43 178.3 120 80.0
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 3.6e-43 178.3 117 80.3
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 3.6e-43 178.3 119 80.7
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.0e-42 176.8 121 79.3
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-42 176.0 120 78.3
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 1.8e-42 176.0 122 78.7
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 1.8e-42 176.0 122 78.7
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.8e-42 176.0 110 81.8
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 3.0e-42 175.3 113 80.5
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 5.2e-42 174.5 120 78.3
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 5.2e-42 174.5 107 91.6
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 5.2e-42 174.5 117 78.6
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 6.8e-42 174.1 105 86.7
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 8.8e-42 173.7 121 72.7
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 8.8e-42 173.7 122 77.9
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 8.8e-42 173.7 122 77.9
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.5e-41 172.9 122 78.7
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 1.5e-41 172.9 122 73.8
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.0e-41 172.6 113 79.6
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.0e-41 172.6 122 77.0
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 2.6e-41 172.2 111 80.2
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 3.4e-41 171.8 119 78.2
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 7.5e-41 170.6 120 78.3
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 7.5e-41 170.6 122 75.4
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 9.8e-41 170.2 120 75.8
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 3.7e-40 168.3 122 74.6
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 3.7e-40 168.3 122 74.6
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 4.8e-40 167.9 120 78.3
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 4.8e-40 167.9 116 75.0
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 6.3e-40 167.5 120 78.3
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 6.3e-40 167.5 120 78.3
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 8.3e-40 167.2 120 75.8
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 8.3e-40 167.2 111 75.7
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.8e-39 166.0 122 73.0
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 4.1e-39 164.9 127 73.2
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.2e-38 163.3 115 76.5
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.2e-38 163.3 115 76.5
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.6e-38 162.9 112 75.9
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 2.7e-38 162.2 122 73.0
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.5e-38 161.8 115 76.5
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 5.9e-38 161.0 122 73.0
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 7.7e-38 160.6 110 74.5
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 7.7e-38 160.6 100 82.0
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 7.7e-38 160.6 122 73.0
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 1.0e-37 160.2 99 82.8
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.0e-37 160.2 99 82.8
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.0e-37 160.2 99 82.8
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.0e-37 160.2 99 82.8
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 1.3e-37 159.8 120 70.8
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 3.8e-37 158.3 99 81.8
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 3.8e-37 158.3 114 71.9
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 6.5e-37 157.5 111 75.7
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 8.6e-37 157.1 122 71.3
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 3.3e-36 155.2 121 68.6
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 4.2e-36 154.8 104 73.1
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 4.2e-36 154.8 120 67.5
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 7.2e-36 154.1 105 73.3
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 9.5e-36 153.7 100 76.0
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 9.5e-36 153.7 106 78.3
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.1e-35 152.5 113 69.9
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.1e-35 152.5 113 69.9
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 2.1e-35 152.5 113 69.9
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 4.7e-35 151.4 103 74.8
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 6.1e-35 151.0 120 68.3
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 6.1e-35 151.0 121 68.6
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 6.1e-35 151.0 109 71.6
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 6.1e-35 151.0 109 71.6
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 8.0e-35 150.6 103 74.8
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.0e-34 150.2 103 72.8
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 1.0e-34 150.2 124 66.9
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.8e-34 149.4 115 66.1
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 4.0e-34 148.3 118 66.9
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 4.0e-34 148.3 114 66.7
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 1.2e-33 146.7 111 70.3
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.2e-33 146.7 113 68.1
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.5e-33 146.4 92 91.3
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.5e-33 146.4 92 91.3
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.5e-33 146.4 114 71.1
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 2.0e-33 146.0 123 67.5
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 2.0e-33 146.0 110 69.1
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 7.5e-33 144.1 98 72.4
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 7.5e-33 144.1 108 65.7
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 6.3e-32 141.0 110 66.4
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 8.3e-32 140.6 96 75.0
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 1.1e-31 140.2 120 62.5
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.4e-31 139.0 95 77.9
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-30 136.7 85 81.2
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.6e-30 136.3 106 70.8
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 4.3e-28 128.3 100 67.0
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 8.0e-27 124.0 89 75.3
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 5.2e-26 121.3 111 55.9
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 3.4e-25 118.6 106 61.3
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 7.5e-25 117.5 88 69.3
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.1e-20 103.6 67 80.6
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-19 99.8 70 72.9
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 3.6e-19 98.6 99 52.5
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 4.7e-19 98.2 99 56.6
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.1e-18 97.1 56 89.3
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 2.3e-18 95.9 67 70.1
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 3.1e-18 95.5 66 66.7
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 3.4e-17 92.0 69 68.1
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.9e-16 89.0 77 62.3
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 2.9e-16 89.0 114 54.4
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 5.4e-15 84.7 56 75.0
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-14 82.8 74 60.8
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 2.7e-14 82.4 90 55.6
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 4.6e-14 81.6 85 56.5
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.6e-13 77.8 71 60.6
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 9.5e-12 73.9 102 44.1
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 8.1e-11 70.9 49 73.5
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.4e-10 70.1 114 40.4
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-09 66.6 83 49.4
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 4.4e-09 65.1 56 60.7
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 1.3e-08 63.5 62 53.2
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 2.2e-08 62.8 35 88.6
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 3.7e-08 62.0 52 61.5
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 4.9e-08 61.6 122 33.6
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 4.9e-08 61.6 63 49.2
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 1.1e-07 60.5 47 63.8
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 6.0e-06 54.7 67 49.3


User provided reference genes

Program Settings