Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 1.7e-79 299.3 149 100.0
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 2.3e-57 225.7 119 94.1
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 7.5e-56 220.7 121 91.7
BcaC02g12375 Brassica carinata HOM05D004353 ORTHO05D004989 6.0e-45 184.5 93 95.7
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 1.5e-32 143.3 87 79.3
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 2.6e-32 142.5 87 80.5
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 3.4e-32 142.1 87 80.5
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 3.4e-32 142.1 87 80.5
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 3.4e-32 142.1 87 80.5
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 7.6e-32 141.0 87 79.3
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 2.9e-31 139.0 87 75.9
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 6.4e-31 137.9 87 79.3
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 8.4e-31 137.5 87 75.9
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 1.4e-30 136.7 87 74.7
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 4.1e-30 135.2 87 74.7
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 2.7e-29 132.5 87 72.4
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 1.7e-28 129.8 87 69.0
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 9.9e-24 114.0 86 60.5
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 1.7e-23 113.2 75 68.0
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 4.9e-23 111.7 74 64.9
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 1.6e-21 106.7 87 57.5
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 3.5e-21 105.5 87 58.6
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 3.5e-21 105.5 87 58.6
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 3.5e-21 105.5 87 58.6
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 3.0e-20 102.4 86 57.0
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 3.9e-20 102.1 86 57.0
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 1.5e-19 100.1 77 59.7
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 4.3e-19 98.6 77 58.4
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 5.6e-19 98.2 87 51.7
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 9.6e-19 97.4 96 47.9
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 9.6e-19 97.4 96 47.9
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 1.6e-18 96.7 74 56.8
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 2.1e-18 96.3 75 57.3
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.1e-18 96.3 87 50.6
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.1e-18 96.3 87 50.6
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 2.1e-18 96.3 89 51.7
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.8e-18 95.9 87 50.6
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.6e-18 95.5 75 54.7
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.6e-18 95.5 87 49.4
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 6.2e-18 94.7 75 53.3
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 1.1e-17 94.0 109 43.1
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 2.4e-17 92.8 86 47.7
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 2.4e-17 92.8 86 47.7
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 4.0e-17 92.0 75 56.0
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.0e-17 92.0 82 47.6
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.0e-17 92.0 82 47.6
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 4.0e-17 92.0 75 53.3
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 5.3e-17 91.7 82 47.6
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.3e-17 91.7 87 46.0
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 5.3e-17 91.7 109 47.7
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 5.3e-17 91.7 75 49.3
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 5.3e-17 91.7 75 49.3
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.9e-17 91.3 82 47.6
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.9e-17 91.3 87 46.0
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 6.9e-17 91.3 75 53.3
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 6.9e-17 91.3 101 42.6
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 9.0e-17 90.9 109 47.7
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 1.5e-16 90.1 75 52.0
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 1.5e-16 90.1 75 52.0
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 1.5e-16 90.1 87 46.0
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 1.5e-16 90.1 89 46.1
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 2.0e-16 89.7 74 56.8
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 2.0e-16 89.7 104 39.4
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 3.4e-16 89.0 94 46.8
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 3.4e-16 89.0 73 54.8
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 5.8e-16 88.2 74 48.6
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 7.6e-16 87.8 87 48.3
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 9.9e-16 87.4 62 58.1
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 9.9e-16 87.4 75 49.3
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 1.7e-15 86.7 75 48.0
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 1.7e-15 86.7 75 49.3
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 2.9e-15 85.9 72 52.8
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 2.9e-15 85.9 75 46.7
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 2.9e-15 85.9 75 46.7
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 3.8e-15 85.5 75 49.3
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 6.4e-15 84.7 75 49.3
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 1.4e-14 83.6 90 42.2
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 1.4e-14 83.6 75 46.7
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 2.4e-14 82.8 74 45.9
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 3.2e-14 82.4 75 48.0
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 3.2e-14 82.4 92 43.5
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 3.2e-14 82.4 92 43.5
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 4.2e-14 82.0 74 43.2
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 5.4e-14 81.6 75 46.7
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 7.1e-14 81.3 89 44.9
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 9.3e-14 80.9 73 49.3
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 9.3e-14 80.9 97 44.3
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 1.2e-13 80.5 75 49.3
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 1.2e-13 80.5 90 45.6
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 1.2e-13 80.5 83 43.4
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 1.6e-13 80.1 93 47.3
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 2.1e-13 79.7 70 45.7
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 2.1e-13 79.7 73 47.9
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 2.7e-13 79.3 79 44.3
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 1.0e-12 77.4 113 41.6
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 3.0e-12 75.9 74 45.9
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 3.0e-12 75.9 75 42.7
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 3.9e-12 75.5 92 40.2
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 8.7e-12 74.3 95 42.1
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 1.5e-11 73.6 75 45.3
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 1.5e-11 73.6 95 41.1
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 1.9e-11 73.2 92 41.3
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 2.5e-11 72.8 92 41.3
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 9.6e-11 70.9 83 39.8
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 2.1e-10 69.7 92 39.1
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 2.8e-10 69.3 85 35.3
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 3.7e-10 68.9 74 44.6
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 6.2e-10 68.2 75 41.3
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.4e-09 67.0 63 44.4
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 1.8e-09 66.6 92 38.0
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 1.8e-09 66.6 92 38.0
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 3.1e-09 65.9 83 38.6
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 9.0e-09 64.3 71 42.3
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 1.2e-08 63.9 65 46.2
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.5e-08 63.5 65 47.7
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 2.0e-08 63.2 67 47.8
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 2.0e-08 63.2 72 41.7
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 3.4e-08 62.4 109 36.7
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 7.6e-08 61.2 89 34.8
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 9.9e-08 60.8 65 44.6
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 1.3e-07 60.5 65 44.6
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 1.7e-07 60.1 92 33.7
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 2.2e-07 59.7 54 46.3
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 2.2e-07 59.7 89 32.6
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 1.4e-06 57.0 62 37.1
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.4e-06 57.0 62 37.1
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 1.9e-06 56.6 59 44.1
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 1.9e-06 56.6 89 33.7
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 3.2e-06 55.8 79 39.2
BraA05t19376Z Brassica rapa HOM05D004353 ORTHO05D004989 5.5e-06 55.1 47 66.0
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.5e-06 55.1 81 32.1
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.5e-06 55.1 73 34.2
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 5.5e-06 55.1 60 40.0
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 7.1e-06 54.7 75 36.0


User provided reference genes

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