Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 0.0e+00 1300.0 632 100.0
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 0.0e+00 1263.8 613 100.0
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 0.0e+00 1194.5 633 93.4
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 0.0e+00 1187.9 628 93.3
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 0.0e+00 1181.4 648 90.9
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 0.0e+00 1154.8 635 89.3
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 0.0e+00 1141.3 638 88.1
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 0.0e+00 1138.3 630 88.3
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 0.0e+00 1121.7 634 87.2
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 0.0e+00 1114.0 627 87.1
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 0.0e+00 1092.4 625 85.9
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 3.0e-311 1071.2 632 82.9
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 1.2e-299 1032.7 652 76.7
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 3.8e-282 974.5 611 76.1
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 3.2e-281 971.5 557 81.0
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 1.6e-280 969.1 549 81.6
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 1.3e-279 966.1 550 80.7
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 5.1e-279 964.1 540 82.0
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 5.1e-279 964.1 549 80.9
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 1.5e-278 962.6 642 72.6
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 1.9e-278 962.2 638 72.9
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 3.3e-278 961.4 565 78.8
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 9.6e-278 959.9 642 72.3
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 2.1e-277 958.7 642 72.7
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 1.1e-276 956.4 550 79.8
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 4.0e-276 954.5 548 79.0
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 1.2e-275 953.0 548 79.4
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 1.5e-275 952.6 595 75.3
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 2.0e-275 952.2 573 77.0
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 2.6e-275 951.8 537 80.8
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 5.8e-275 950.7 569 77.9
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 7.6e-275 950.3 540 80.9
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 7.6e-275 950.3 555 78.9
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 2.2e-274 948.7 572 77.8
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 8.4e-274 946.8 540 80.4
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 1.1e-273 946.4 581 76.6
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 1.4e-273 946.0 537 80.3
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 4.2e-273 944.5 623 71.9
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 5.5e-273 944.1 573 76.6
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 1.6e-272 942.6 551 80.2
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 2.1e-272 942.2 634 71.0
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 1.0e-271 939.9 639 70.7
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 5.1e-271 937.6 548 78.5
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 5.1e-271 937.6 587 76.0
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 1.1e-270 936.4 548 78.5
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 1.3e-269 932.9 583 75.3
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 8.1e-269 930.2 548 78.1
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 1.1e-268 929.9 540 78.5
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 6.9e-268 927.2 588 73.8
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 9.0e-268 926.8 579 75.0
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 1.2e-267 926.4 537 78.4
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 2.9e-266 921.8 545 76.5
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 3.8e-266 921.4 613 71.3
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 3.8e-266 921.4 589 74.2
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 9.3e-265 916.8 547 76.1
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 1.6e-264 916.0 537 78.0
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 1.6e-264 916.0 680 66.0
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 7.9e-264 913.7 619 71.9
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 7.9e-264 913.7 560 75.5
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 2.3e-263 912.1 612 71.1
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 5.7e-262 907.5 610 70.8
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 9.6e-262 906.7 605 71.6
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 1.3e-261 906.4 595 72.9
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 1.8e-260 902.5 571 73.0
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 3.1e-260 901.7 605 68.8
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 1.5e-259 899.4 603 70.6
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 1.0e-258 896.7 548 76.1
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 5.5e-257 891.0 548 75.5
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 2.7e-256 888.6 514 77.6
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 6.1e-256 887.5 599 69.3
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 1.0e-255 886.7 550 75.5
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 8.7e-255 883.6 541 75.4
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 4.6e-248 861.3 581 70.2
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 4.6e-248 861.3 553 72.2
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 1.5e-246 856.3 569 71.9
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 1.3e-245 853.2 547 71.1
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 8.2e-245 850.5 652 65.6
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 8.2e-245 850.5 710 60.6
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 1.1e-244 850.1 490 78.8
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 6.9e-244 847.4 551 73.3
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 1.9e-241 839.3 540 71.1
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 4.7e-240 834.7 758 56.3
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 5.0e-234 814.7 550 70.5
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 1.1e-233 813.5 478 77.6
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 3.2e-233 812.0 550 70.4
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 1.2e-232 810.1 467 78.2
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 2.4e-220 769.2 500 71.0
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 6.5e-218 761.1 550 66.4
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 8.0e-216 754.2 432 78.5
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 8.6e-194 681.0 550 58.5
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 3.6e-192 675.6 449 71.7
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 2.5e-185 652.9 459 66.0
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 3.6e-184 649.0 369 79.7
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 4.4e-174 615.5 586 54.9
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 6.0e-171 605.1 538 57.1
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 5.4e-164 582.0 441 63.5
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 3.0e-162 576.2 556 50.5
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 2.1e-160 570.1 559 49.9
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 5.1e-154 548.9 350 72.9
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 1.8e-135 487.3 347 69.7
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 1.4e-119 434.5 457 52.1
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 6.7e-114 415.6 282 69.5
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 2.4e-95 354.0 201 78.1
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 9.2e-95 352.1 202 77.2
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 5.1e-77 293.1 180 74.4
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 4.3e-76 290.0 272 57.4
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 9.5e-76 288.9 172 75.6
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 4.4e-73 280.0 173 73.4
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 6.4e-72 276.2 170 73.5
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 2.7e-54 217.6 150 68.0
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.7e-48 198.4 119 75.6
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 4.2e-47 193.7 116 74.1
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 8.7e-45 186.0 106 81.1
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.9e-36 158.3 127 66.9
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.1e-34 152.5 127 64.6
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.2e-30 139.0 82 74.4
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 1.3e-29 135.6 101 66.3
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 9.7e-28 129.4 100 63.0
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.4e-26 125.6 112 61.6
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.4e-26 125.6 112 61.6
CSS0016187 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.2e-16 91.7 78 59.0
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 4.7e-14 84.0 111 47.7
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 1.0e-13 82.8 114 48.2
CSS0019028 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 6.3e-11 73.6 44 77.3
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 8.2e-11 73.2 51 62.7
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 9.1e-10 69.7 52 61.5
CSS0008442 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 1.2e-09 69.3 44 72.7
CSS0022444 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 1.2e-09 69.3 44 72.7
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.9e-08 64.7 34 85.3
BcaC02g12400 Brassica carinata HOM05D000001 ORTHO05D000003 3.8e-08 64.3 122 36.1
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 1.4e-07 62.4 42 66.7
C04p04450 Brassica napus HOM05D000001 ORTHO05D000003 1.9e-07 62.0 111 38.7
BolC4t22078H Brassica oleracea HOM05D000001 ORTHO05D000003 1.9e-07 62.0 111 38.7


User provided reference genes

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