Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 0.0e+00 2105.9 1109 100.0
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 0.0e+00 2063.5 1109 98.1
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 0.0e+00 1966.0 1110 93.6
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 0.0e+00 1939.5 1111 92.9
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-228 797.3 533 84.1
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 5.6e-172 609.4 564 63.1
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 2.4e-159 567.4 625 57.9
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 3.1e-154 550.4 545 60.9
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 5.8e-153 546.2 547 60.1
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.7e-152 544.7 623 55.1
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-151 542.0 558 58.2
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 3.2e-151 540.4 622 55.1
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 3.2e-151 540.4 631 54.8
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 5.4e-151 539.7 614 55.5
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 7.1e-151 539.3 621 54.8
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 6.0e-150 536.2 614 55.0
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 7.8e-150 535.8 623 55.4
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 3.1e-146 523.9 621 54.8
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 6.4e-144 516.2 579 57.3
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 7.1e-143 512.7 622 54.2
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 7.6e-137 492.7 585 54.2
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 3.9e-133 480.3 632 50.0
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 4.3e-132 476.9 586 53.2
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.4e-109 402.1 626 42.8
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 4.8e-107 393.7 630 42.4
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 8.2e-107 392.9 598 44.8
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 9.1e-106 389.4 622 42.3
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 9.1e-106 389.4 629 42.3
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.5e-105 388.7 607 43.7
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 2.6e-105 387.9 619 43.0
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 7.7e-105 386.3 590 44.4
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.3e-104 385.6 620 42.7
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.7e-104 385.2 636 40.1
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 6.5e-104 383.3 622 42.8
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.9e-103 381.7 636 40.4
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.5e-103 381.3 616 42.0
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.2e-103 380.6 616 42.0
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 7.2e-103 379.8 624 41.2
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 7.2e-103 379.8 625 41.4
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.2e-102 379.0 620 41.1
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 6.1e-102 376.7 631 40.7
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.0e-101 375.9 449 54.6
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.0e-101 375.9 616 41.7
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 2.3e-101 374.8 619 41.4
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 8.8e-101 372.9 604 42.5
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 1.1e-100 372.5 646 39.5
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.6e-100 371.3 621 41.1
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 2.6e-100 371.3 623 41.3
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 4.4e-100 370.5 620 41.5
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 7.4e-100 369.8 630 39.7
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 9.7e-100 369.4 637 39.2
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.3e-99 369.0 634 39.4
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 2.2e-99 368.2 643 40.1
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 4.8e-99 367.1 629 42.1
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 6.3e-99 366.7 586 43.3
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 1.1e-98 365.9 617 39.5
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.4e-98 365.5 623 42.1
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 3.1e-98 364.4 610 40.7
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 7.0e-98 363.2 640 40.5
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 7.0e-98 363.2 623 40.6
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 9.1e-98 362.8 616 38.6
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 2.0e-97 361.7 626 41.1
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 2.6e-97 361.3 618 39.3
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 7.7e-97 359.8 636 40.7
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.7e-96 358.6 625 39.8
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.7e-96 358.6 625 39.8
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 2.2e-96 358.2 631 39.6
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 3.8e-96 357.5 618 39.2
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.1e-95 355.9 636 39.8
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-95 355.9 636 40.1
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.5e-95 355.5 609 39.9
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.9e-95 355.1 636 40.1
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 2.5e-95 354.8 618 40.5
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 2.5e-95 354.8 644 38.4
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 9.4e-95 352.8 622 40.0
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-94 352.4 636 39.9
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-94 352.1 636 39.5
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-94 352.1 636 39.8
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-94 352.1 636 39.8
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 2.7e-94 351.3 619 39.6
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-94 350.9 636 39.8
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.7e-94 350.5 632 39.6
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 4.7e-94 350.5 618 40.1
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 8.8e-93 346.3 641 37.8
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 8.8e-93 346.3 637 38.5
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.5e-92 345.5 634 38.2
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.5e-92 345.5 618 38.5
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.3e-91 342.4 616 38.6
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.7e-91 342.0 633 37.9
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.2e-91 341.7 625 39.2
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 1.4e-90 339.0 622 38.6
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.8e-90 338.6 628 38.4
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 3.5e-89 334.3 541 42.5
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.7e-88 332.0 578 39.6
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 1.7e-88 332.0 619 37.3
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 4.7e-86 323.9 562 39.9
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.7e-86 323.9 591 38.6
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 5.2e-85 320.5 608 37.2
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 2.0e-84 318.5 623 37.7
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 2.0e-84 318.5 623 36.6
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 2.6e-84 318.2 625 37.0
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 8.3e-83 313.2 626 37.1
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 5.9e-81 307.0 622 37.5
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.3e-80 305.8 607 36.2
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 2.9e-80 304.7 596 37.1
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 4.2e-79 300.8 578 38.1
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 5.6e-79 300.4 598 37.0
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 2.8e-78 298.1 604 35.4
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 8.0e-78 296.6 657 35.8
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.8e-77 295.4 585 36.1
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 7.5e-76 290.0 610 37.4
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 4.1e-74 284.3 651 33.3
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 5.4e-74 283.9 578 36.9
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 2.0e-68 265.4 544 37.9
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 4.9e-67 260.8 650 32.2
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 4.1e-66 257.7 570 33.7
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 2.0e-65 255.4 478 37.2
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 7.8e-65 253.4 524 34.7
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 1.7e-64 252.3 532 34.6
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.9e-63 248.8 412 41.0
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 3.3e-63 248.1 414 40.8
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 7.3e-63 246.9 412 41.3
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 9.5e-63 246.5 358 43.6
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.1e-62 245.4 525 35.6
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-62 244.6 523 34.8
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 2.0e-60 238.8 419 40.6
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.0e-60 238.8 353 44.2
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.0e-56 226.5 532 32.9
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.4e-50 206.1 339 43.4
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 5.4e-50 204.1 365 38.1
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 7.8e-49 200.3 108 95.4
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-48 199.5 325 44.6
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.5e-47 196.1 633 27.5
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-46 193.0 149 67.1
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-43 183.0 484 30.8
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.9e-43 181.8 337 38.9
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 2.1e-33 149.1 183 57.4
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 9.9e-28 130.2 663 24.6
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 8.7e-24 117.1 129 55.0
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.6e-22 112.8 402 26.9
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 2.4e-21 109.0 88 67.0
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 6.9e-21 107.5 88 65.9
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 5.8e-20 104.4 156 53.8
BolC5t33660H Brassica oleracea HOM05D001997 ORTHO05D004620 7.6e-20 104.0 333 31.5
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 2.2e-19 102.4 155 40.6
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 4.2e-18 98.2 61 82.0
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 9.3e-18 97.1 127 52.8
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.7e-17 95.5 86 57.0
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 3.5e-17 95.1 132 48.5
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 3.5e-17 95.1 115 45.2
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 7.9e-17 94.0 116 50.0
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 3.9e-16 91.7 80 61.2
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.9e-15 89.4 117 41.9
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 4.3e-15 88.2 117 42.7
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 1.6e-14 86.3 216 33.3
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 8.2e-14 84.0 249 31.3
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 8.2e-14 84.0 297 31.6
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.4e-13 83.2 128 44.5
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 6.9e-13 80.9 72 66.7
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 9.0e-13 80.5 62 67.7
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 9.0e-13 80.5 62 67.7
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 2.6e-12 79.0 100 47.0
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 3.4e-12 78.6 62 66.1
BcaC01g05246 Brassica carinata HOM05D001997 ORTHO05D004620 3.8e-11 75.1 88 54.5
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 8.4e-11 73.9 71 54.9
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 1.1e-10 73.6 88 48.9
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.9e-10 72.8 86 46.5
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 2.1e-09 69.3 73 52.1
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.8e-08 66.2 48 60.4
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.7e-08 63.9 241 25.3
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 7.4e-07 60.8 83 42.2


User provided reference genes

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