Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 1.2e-67 260.0 157 100.0
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 1.0e-63 246.9 158 96.2
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 1.0e-63 246.9 158 96.2
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 5.1e-63 244.6 158 96.2
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 5.1e-63 244.6 158 96.2
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 3.1e-60 235.3 159 79.2
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 2.6e-59 232.3 158 76.6
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 9.3e-57 223.8 157 73.9
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 2.3e-55 219.2 157 73.9
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 2.5e-54 215.7 157 71.3
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 4.3e-54 214.9 159 74.2
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 4.3e-54 214.9 159 74.2
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 1.6e-53 213.0 161 72.0
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 9.1e-52 207.2 157 70.7
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 9.1e-52 207.2 157 70.7
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 2.9e-50 202.2 165 67.3
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 8.5e-42 174.1 159 62.9
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 8.5e-42 174.1 159 62.9
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 4.0e-31 138.7 157 54.1
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 5.3e-28 128.3 164 55.5
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 7.0e-28 127.9 146 51.4
BcaC02g07205 Brassica carinata HOM05D005211 ORTHO05D006148 5.4e-20 101.7 87 65.5
C04p70110 Brassica napus HOM05D012854 ORTHO05D006148 2.3e-15 86.3 55 80.0
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.5e-14 83.6 142 40.1
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.5e-14 83.6 142 40.1
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.6e-14 82.8 145 40.0
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 7.5e-14 81.3 140 38.6
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.5e-14 81.3 142 40.1
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.2e-13 79.7 142 39.4
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 2.2e-13 79.7 146 41.1
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 2.8e-13 79.3 145 40.7
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 3.7e-13 79.0 140 38.6
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 1.4e-12 77.0 155 38.7
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 1.4e-12 77.0 151 37.7
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 3.1e-12 75.9 110 44.5
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 4.1e-12 75.5 150 44.7
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 5.4e-12 75.1 152 32.2
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 5.4e-12 75.1 138 39.9
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 5.4e-12 75.1 146 39.7
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 7.0e-12 74.7 121 42.1
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 1.2e-11 73.9 148 35.1
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 2.0e-11 73.2 170 34.1
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 2.0e-11 73.2 117 42.7
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 2.0e-11 73.2 142 35.9
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 3.5e-11 72.4 145 37.9
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 5.9e-11 71.6 130 36.9
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 7.8e-11 71.2 156 34.0
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 1.0e-10 70.9 133 37.6
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 1.0e-10 70.9 146 36.3
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 1.0e-10 70.9 147 32.7
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.7e-10 70.1 147 36.1
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 1.7e-10 70.1 151 34.4
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 1.7e-10 70.1 138 35.5
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 1.7e-10 70.1 160 35.0
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 2.3e-10 69.7 139 36.7
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 2.3e-10 69.7 139 36.7
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 2.3e-10 69.7 141 34.8
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.9e-10 69.3 147 34.0
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 3.8e-10 68.9 145 35.2
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 5.0e-10 68.6 151 41.1
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 5.0e-10 68.6 139 36.7
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 6.6e-10 68.2 155 32.9
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 8.6e-10 67.8 152 34.2
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 8.6e-10 67.8 133 36.1
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 1.1e-09 67.4 164 42.7
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 1.1e-09 67.4 163 33.1
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.1e-09 67.4 135 31.9
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 1.5e-09 67.0 145 33.8
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 1.5e-09 67.0 145 37.2
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 1.9e-09 66.6 155 32.9
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 1.9e-09 66.6 135 37.0
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.9e-09 66.6 155 32.3
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 1.9e-09 66.6 154 32.5
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 2.5e-09 66.2 120 40.0
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.5e-09 66.2 106 41.5
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 2.5e-09 66.2 149 32.9
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 2.5e-09 66.2 140 32.9
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 2.5e-09 66.2 133 37.6
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.3e-09 65.9 155 32.3
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 3.3e-09 65.9 142 34.5
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 5.6e-09 65.1 157 35.7
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 5.6e-09 65.1 147 32.7
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 5.6e-09 65.1 129 34.1
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 7.3e-09 64.7 140 36.4
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 7.3e-09 64.7 148 33.1
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 7.3e-09 64.7 136 31.6
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 9.5e-09 64.3 140 37.1
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 1.2e-08 63.9 127 35.4
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 1.2e-08 63.9 165 31.5
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 1.2e-08 63.9 175 29.7
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 1.2e-08 63.9 152 34.9
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.2e-08 63.9 141 34.8
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 1.6e-08 63.5 152 32.9
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.6e-08 63.5 154 33.1
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.6e-08 63.5 154 33.1
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 2.8e-08 62.8 144 35.4
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 2.8e-08 62.8 130 36.2
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 2.8e-08 62.8 157 31.8
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 2.8e-08 62.8 106 40.6
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 4.7e-08 62.0 139 36.7
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 4.7e-08 62.0 174 36.2
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 6.1e-08 61.6 139 50.4
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 6.1e-08 61.6 165 29.7
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 1.0e-07 60.8 152 31.6
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 1.4e-07 60.5 162 39.5
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.3e-07 59.7 141 31.9
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.3e-07 59.7 156 32.7
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 2.3e-07 59.7 148 34.5
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 4.0e-07 58.9 138 34.1
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.2e-07 58.5 157 32.5
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 6.8e-07 58.2 145 33.1
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 1.5e-06 57.0 151 32.5
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.5e-06 57.0 151 32.5
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.0e-06 56.6 138 32.6
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 2.0e-06 56.6 160 35.6
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 2.6e-06 56.2 121 33.9
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 4.4e-06 55.5 145 31.7
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 7.5e-06 54.7 132 34.1
THA.LOC104820593 Tarenaya hassleriana HOM05D001624 ORTHO05D001530 7.5e-06 54.7 153 29.4
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 9.8e-06 54.3 101 39.6
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 9.8e-06 54.3 137 31.4
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 9.8e-06 54.3 137 37.2


User provided reference genes

Program Settings