Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 0.0e+00 1820.4 937 100.0
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 0.0e+00 1723.8 895 99.1
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 0.0e+00 1556.6 832 96.6
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 0.0e+00 1548.1 833 96.6
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 0.0e+00 1495.7 841 91.0
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 0.0e+00 1487.2 841 90.4
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 0.0e+00 1484.9 841 90.8
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 0.0e+00 1478.8 841 90.7
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 0.0e+00 1471.1 841 89.9
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 0.0e+00 1469.1 842 89.4
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 0.0e+00 1384.4 892 81.4
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 0.0e+00 1261.9 858 76.3
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 1.3e-311 1073.2 872 65.0
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 2.3e-307 1058.9 872 64.0
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 3.8e-307 1058.1 872 64.1
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 1.2e-303 1046.6 872 63.2
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 1.2e-303 1046.6 873 63.0
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 8.3e-302 1040.4 871 63.3
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 1.1e-298 1030.0 871 62.8
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 7.3e-298 1027.3 876 61.5
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 1.8e-296 1022.7 868 63.1
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 4.0e-296 1021.5 862 63.1
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 6.8e-296 1020.8 874 62.1
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 6.8e-296 1020.8 874 62.1
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 1.2e-295 1020.0 869 61.8
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.5e-295 1019.6 865 61.7
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 2.0e-295 1019.2 857 62.5
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 3.4e-295 1018.5 867 62.3
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 3.4e-295 1018.5 862 62.6
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.3e-294 1016.5 867 61.0
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 2.2e-294 1015.8 871 62.3
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 2.2e-294 1015.8 874 61.3
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 4.9e-294 1014.6 867 60.9
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 4.9e-294 1014.6 866 61.8
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 6.4e-294 1014.2 871 61.2
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 8.3e-294 1013.8 875 60.6
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 5.4e-293 1011.1 871 61.7
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 5.4e-293 1011.1 872 61.1
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 5.4e-293 1011.1 866 61.7
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 2.0e-292 1009.2 877 63.2
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 2.3e-291 1005.7 874 61.3
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 1.1e-290 1003.4 875 61.3
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 2.3e-288 995.7 823 64.2
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 6.8e-288 994.2 864 61.0
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 5.8e-287 991.1 871 60.8
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 5.4e-285 984.6 872 60.6
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 5.4e-285 984.6 870 61.4
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 7.0e-285 984.2 870 60.6
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 7.8e-284 980.7 883 59.0
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 1.3e-283 979.9 868 60.6
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 1.3e-283 979.9 886 60.7
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 1.1e-282 976.9 881 59.3
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 1.5e-282 976.5 869 60.8
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 1.5e-282 976.5 875 59.2
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 4.3e-282 974.9 874 58.2
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 1.2e-281 973.4 831 61.6
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 4.7e-281 971.5 871 60.4
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 4.7e-281 971.5 859 61.1
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 6.8e-280 967.6 854 61.5
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 4.4e-279 964.9 872 59.3
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 9.9e-279 963.8 872 58.8
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 1.7e-278 963.0 872 59.7
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 1.1e-277 960.3 833 60.7
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 5.1e-275 951.4 873 58.9
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 6.6e-275 951.0 877 58.5
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 5.6e-274 948.0 870 59.8
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 2.1e-273 946.0 873 57.6
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 6.2e-273 944.5 872 57.1
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 8.9e-272 940.6 882 56.7
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 2.0e-271 939.5 879 57.3
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 9.9e-271 937.2 873 57.5
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 3.8e-270 935.3 867 57.7
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 4.3e-266 921.8 880 55.9
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 4.8e-265 918.3 859 58.7
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 4.0e-264 915.2 852 58.3
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 6.9e-264 914.4 870 56.8
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 1.2e-260 903.7 860 56.5
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 6.0e-260 901.4 877 55.9
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 2.5e-258 896.0 873 55.1
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 2.9e-254 882.5 808 58.4
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 3.8e-254 882.1 809 59.2
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 1.4e-253 880.2 866 54.5
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 1.5e-247 860.1 849 55.6
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 1.4e-245 853.6 830 57.6
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 7.1e-245 851.3 749 61.4
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 5.1e-243 845.1 847 53.8
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 3.3e-242 842.4 745 60.4
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 7.4e-242 841.3 810 57.0
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 1.3e-238 830.5 872 51.4
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 7.7e-231 804.7 875 51.5
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 1.4e-227 793.9 871 50.6
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 9.7e-226 787.7 864 51.3
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 1.1e-221 774.2 870 48.5
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 3.6e-220 769.2 858 50.2
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 7.4e-218 761.5 655 62.3
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 3.0e-203 713.0 677 58.6
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 7.0e-200 701.8 799 50.4
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 3.8e-190 669.5 754 49.2
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 9.2e-160 568.5 744 45.0
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 6.0e-159 565.8 529 56.3
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 1.6e-143 514.6 431 61.5
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 1.3e-140 505.0 821 37.8
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 9.0e-139 498.8 849 37.6
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 1.2e-138 498.4 820 39.3
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 3.6e-95 354.0 992 29.2
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 1.1e-91 342.4 298 59.4
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 4.3e-56 224.2 179 68.7
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 8.4e-28 130.2 919 22.3
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 1.0e-25 123.2 80 77.5
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 1.3e-23 116.3 100 59.0
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.6e-23 115.9 85 61.2
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 9.3e-19 100.1 903 21.6
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 5.1e-17 94.4 64 70.3
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 1.3e-15 89.7 98 45.9
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 5.3e-14 84.3 558 24.2
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 3.4e-13 81.6 65 56.9
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 4.5e-13 81.3 57 66.7
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 2.7e-10 72.0 101 50.5
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 2.7e-10 72.0 65 52.3
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.3e-09 69.7 56 57.1
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 6.7e-09 67.4 56 51.8
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 4.8e-07 61.2 45 57.8
Lsat_1_v5_gn_4_67501 Lactuca sativa HOM05D001373 ORTHO05D001330 1.4e-06 59.7 56 53.6


User provided reference genes

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