Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p03650 Brassica napus HOM05D062509 ORTHO05D096760 1.7e-88 329.3 167 100.0
C08p30480 Brassica napus HOM05D062509 ORTHO05D098357 2.2e-19 99.8 87 60.9
BcaC02g09123 Brassica carinata HOM05D000055 ORTHO05D001675 5.2e-13 78.6 56 76.8
C04p38670 Brassica napus HOM05D000055 ORTHO05D001675 5.2e-13 78.6 56 76.8
BolC4t25445H Brassica oleracea HOM05D000055 ORTHO05D001675 5.2e-13 78.6 56 76.8
BcaB02g08501 Brassica carinata HOM05D000055 ORTHO05D001675 1.2e-12 77.4 56 75.0
A04p05830 Brassica napus HOM05D000055 ORTHO05D001675 7.5e-12 74.7 56 73.2
Thhalv10010160m.g Eutrema salsugineum HOM05D000055 ORTHO05D001675 7.5e-12 74.7 56 73.2
Sp5g08470 Schrenkiella parvula HOM05D000055 ORTHO05D001675 7.5e-12 74.7 56 73.2
BraA04t16280Z Brassica rapa HOM05D000055 ORTHO05D001675 9.7e-12 74.3 56 73.2
AL5G34910 Arabidopsis lyrata HOM05D000055 ORTHO05D001675 1.7e-11 73.6 56 73.2
AT3G53930 Arabidopsis thaliana HOM05D000055 ORTHO05D001675 1.7e-11 73.6 56 73.2
Carub.0005s2050 Capsella rubella HOM05D000055 ORTHO05D001675 1.7e-11 73.6 56 73.2
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 7.0e-10 68.2 49 77.6
AL4G34790 Arabidopsis lyrata HOM05D000055 ORTHO05D001675 2.0e-09 66.6 56 66.1
AT2G37840 Arabidopsis thaliana HOM05D000055 ORTHO05D001675 2.0e-09 66.6 56 66.1
Carub.0004s1976 Capsella rubella HOM05D000055 ORTHO05D001675 4.5e-09 65.5 56 64.3
Thhalv10016391m.g Eutrema salsugineum HOM05D000055 ORTHO05D001675 3.8e-08 62.4 56 60.7
Aa31sc88G40 Aethionema arabicum HOM05D000055 ORTHO05D001675 6.5e-08 61.6 56 64.3
FvH4_6g12940 Fragaria vesca HOM05D000055 ORTHO05D001675 1.5e-07 60.5 57 61.4
FAN05G3613 Fragaria x ananassa HOM05D000055 ORTHO05D001675 1.5e-07 60.5 57 61.4
FAN09G1756 Fragaria x ananassa HOM05D000055 ORTHO05D001675 1.5e-07 60.5 57 61.4
FAN14G4822 Fragaria x ananassa HOM05D000055 ORTHO05D001675 1.5e-07 60.5 57 61.4
MD04G1136900 Malus domestica HOM05D000055 ORTHO05D001675 1.5e-07 60.5 57 61.4
Thecc.05G031200 Theobroma cacao HOM05D000055 ORTHO05D001675 1.5e-07 60.5 57 61.4
AUR62025776 Chenopodium quinoa HOM05D000055 ORTHO05D001675 2.5e-07 59.7 57 57.9
Lalb_Chr07g0193101 Lupinus albus HOM05D000055 ORTHO05D001675 2.5e-07 59.7 57 59.6
Nn2g13503 Nelumbo nucifera HOM05D000055 ORTHO05D001675 2.5e-07 59.7 57 59.6
Prupe.6G262900 Prunus persica HOM05D000055 ORTHO05D001675 2.5e-07 59.7 57 61.4
CANSAT35G1498 Cannabis sativa HOM05D000055 ORTHO05D001675 3.2e-07 59.3 56 60.7
CiPaw.09G199700 Carya illinoinensis HOM05D000055 ORTHO05D001675 3.2e-07 59.3 57 59.6
MELO3C009226.2 Cucumis melo HOM05D000055 ORTHO05D001675 3.2e-07 59.3 57 57.9
CsaV3_3G034550 Cucumis sativus L. HOM05D000055 ORTHO05D001675 3.2e-07 59.3 57 57.9
Sc01g0004700 Simmondsia chinensis HOM05D000055 ORTHO05D001675 3.2e-07 59.3 57 59.6
BcaB01g03749 Brassica carinata HOM05D000055 ORTHO05D001675 4.2e-07 58.9 56 62.5
RcHm_v2.0_Chr3g0465041 Rosa chinensis HOM05D000055 ORTHO05D001675 4.2e-07 58.9 57 59.6
GSVIVG01034089001 Vitis vinifera HOM05D000055 ORTHO05D001675 4.2e-07 58.9 57 59.6
BcaC01g05589 Brassica carinata HOM05D000055 ORTHO05D001675 5.5e-07 58.5 56 62.5
C03p24540 Brassica napus HOM05D000055 ORTHO05D001675 5.5e-07 58.5 56 62.5
BolC3t14852H Brassica oleracea HOM05D000055 ORTHO05D001675 5.5e-07 58.5 56 62.5
BraA03t11329Z Brassica rapa HOM05D000055 ORTHO05D001675 5.5e-07 58.5 56 62.5
Phvul.010G015100 Phaseolus vulgaris HOM05D000055 ORTHO05D001675 5.5e-07 58.5 89 46.1
Sed0012814 Sechium edule HOM05D000055 ORTHO05D001675 5.5e-07 58.5 57 56.1
TWI53G0243 Tripterygium wilfordii HOM05D000055 ORTHO05D001675 5.5e-07 58.5 57 59.6
Cfa017311 Carpinus fangiana HOM05D000055 ORTHO05D001675 7.2e-07 58.2 57 57.9
ClCG10G021490 Citrullus lanatus HOM05D000055 ORTHO05D001675 7.2e-07 58.2 56 57.1
Haze_20868 Corylus avellana HOM05D000055 ORTHO05D001675 7.2e-07 58.2 57 57.9
Manes.09G096800 Manihot esculenta HOM05D000055 ORTHO05D001675 7.2e-07 58.2 57 59.6
THA.LOC104823411 Tarenaya hassleriana HOM05D000055 ORTHO05D001675 7.2e-07 58.2 56 58.9
A03p20890 Brassica napus HOM05D000055 ORTHO05D001675 9.4e-07 57.8 56 60.7
Cpa.g.sc56.42 Carica papaya HOM05D000055 ORTHO05D001675 9.4e-07 57.8 57 57.9
Glyma.01G099600 Glycine max HOM05D000055 ORTHO05D001675 9.4e-07 57.8 55 60.0
Nn2g11263 Nelumbo nucifera HOM05D000055 ORTHO05D001675 9.4e-07 57.8 57 57.9
Sed0006565 Sechium edule HOM05D000055 ORTHO05D001675 9.4e-07 57.8 57 56.1
Gohir.A04G085400 Gossypium hirsutum HOM05D000055 ORTHO05D001675 1.2e-06 57.4 57 56.1
Gorai.012G108100 Gossypium raimondii HOM05D000055 ORTHO05D001675 1.2e-06 57.4 57 56.1
Sabra06G0070600 Salix brachista HOM05D000055 ORTHO05D001675 1.2e-06 57.4 57 56.1
Atru.chr8.2076 Acer truncatum HOM05D000055 ORTHO05D001675 1.6e-06 57.0 57 59.6
Duzib128G0746 Durio zibethinus HOM05D000055 ORTHO05D001675 1.6e-06 57.0 57 56.1
Gohir.A13G099000 Gossypium hirsutum HOM05D000055 ORTHO05D001675 1.6e-06 57.0 57 54.4
Gohir.D13G095000 Gossypium hirsutum HOM05D000055 ORTHO05D001675 1.6e-06 57.0 57 54.4
VMungo0331G1445 Vigna mungo HOM05D000055 ORTHO05D001675 1.6e-06 57.0 57 57.9
Ah.02g115410 Amaranthus hybridus HOM05D000055 ORTHO05D001675 2.1e-06 56.6 56 57.1
EL10Ac5g11559 Beta vulgaris HOM05D000055 ORTHO05D001675 2.1e-06 56.6 57 56.1
AUR62043662 Chenopodium quinoa HOM05D000055 ORTHO05D001675 2.1e-06 56.6 57 56.1
MD12G1151100 Malus domestica HOM05D000055 ORTHO05D001675 2.1e-06 56.6 57 56.1
Medtr4g019410 Medicago truncatula HOM05D000055 ORTHO05D001675 2.1e-06 56.6 56 57.1
Potri.016G104900 Populus trichocarpa HOM05D000055 ORTHO05D001675 2.1e-06 56.6 56 57.1
TPR.G32523 Trifolium pratense HOM05D000055 ORTHO05D001675 2.1e-06 56.6 56 57.1
Ciclev10011177m.g Citrus clementina HOM05D000055 ORTHO05D001675 2.7e-06 56.2 57 56.1
Potri.006G092900 Populus trichocarpa HOM05D000055 ORTHO05D001675 2.7e-06 56.2 57 56.1
PGR004G0083 Punica granatum HOM05D000055 ORTHO05D001675 2.7e-06 56.2 57 57.9
PGR107G0004 Punica granatum HOM05D000055 ORTHO05D001675 2.7e-06 56.2 57 57.9
QL07p028568 Quercus lobata HOM05D000055 ORTHO05D001675 2.7e-06 56.2 57 57.9
vmacro20188 Vaccinium macrocarpon HOM05D000055 ORTHO05D001675 2.7e-06 56.2 56 57.1
Nitab4.5_0000828g0030 Nicotiana tabacum HOM05D000055 ORTHO05D001675 3.6e-06 55.8 56 58.9
Nitab4.5_0002170g0030 Nicotiana tabacum HOM05D000055 ORTHO05D001675 3.6e-06 55.8 56 58.9
Oeu013147.1 Olea europaea HOM05D000055 ORTHO05D001675 3.6e-06 55.8 56 57.1
TWI77G0832 Tripterygium wilfordii HOM05D000055 ORTHO05D001675 3.6e-06 55.8 57 56.1
TAR623G1189 Trochodendron aralioides HOM05D000055 ORTHO05D001675 3.6e-06 55.8 56 57.1
unitig_578.g15882 Utricularia gibba HOM05D000055 ORTHO05D001675 3.6e-06 55.8 56 55.4
FAN02G1079 Fragaria x ananassa HOM05D000055 ORTHO05D001675 4.7e-06 55.5 57 56.1
Oeu001845.1 Olea europaea HOM05D000055 ORTHO05D001675 4.7e-06 55.5 56 53.6
Psat7g241920 Pisum sativum HOM05D000055 ORTHO05D001675 4.7e-06 55.5 56 55.4
SalBow5G3548 Salvia bowleyana HOM05D000055 ORTHO05D001675 4.7e-06 55.5 56 57.1
DCAR_012134 Daucus carota HOM05D000055 ORTHO05D001675 6.1e-06 55.1 56 55.4
COL.COLO4_14716 Corchorus olitorius HOM05D000055 ORTHO05D001675 8.0e-06 54.7 60 56.7
Gorai.001G247200 Gossypium raimondii HOM05D000055 ORTHO05D001675 8.0e-06 54.7 57 52.6
Lj3g0009590 Lotus japonicus HOM05D000055 ORTHO05D001675 8.0e-06 54.7 56 55.4
SalBow4G0517 Salvia bowleyana HOM05D000055 ORTHO05D001675 8.0e-06 54.7 58 53.4


User provided reference genes

Program Settings