Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 7.1e-62 240.4 116 100.0
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 7.1e-62 240.4 116 100.0
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 3.5e-61 238.0 116 99.1
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 6.9e-57 223.8 112 98.2
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 1.5e-56 222.6 112 97.3
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 5.8e-56 220.7 114 97.4
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 1.0e-55 219.9 113 97.3
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.7e-55 219.2 114 96.5
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 6.5e-55 217.2 114 95.6
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.1e-54 216.5 114 95.6
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.1e-54 216.5 114 95.6
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 1.9e-54 215.7 120 93.3
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.2e-53 213.0 114 93.0
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 2.1e-53 212.2 115 93.0
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 3.5e-53 211.5 104 98.1
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 3.5e-53 211.5 112 92.0
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 3.5e-53 211.5 104 98.1
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 6.1e-53 210.7 116 91.4
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 6.1e-53 210.7 116 91.4
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 6.1e-53 210.7 112 92.0
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 6.1e-53 210.7 112 92.0
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 6.1e-53 210.7 112 92.0
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 1.3e-52 209.5 112 91.1
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.8e-52 209.1 115 90.4
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 3.0e-52 208.4 115 89.6
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 8.7e-52 206.8 108 92.6
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 1.5e-51 206.1 115 89.6
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.3e-51 204.9 113 89.4
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 9.7e-51 203.4 116 86.2
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 9.0e-49 196.8 114 85.1
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 6.5e-47 190.7 112 81.2
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 4.2e-46 188.0 115 82.6
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 7.4e-43 177.2 95 82.1
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.3e-42 176.4 92 83.7
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 2.8e-42 175.3 107 75.7
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.1e-41 173.3 112 75.0
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 1.4e-41 172.9 102 78.4
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 1.4e-41 172.9 102 79.4
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.9e-41 170.6 106 75.5
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 9.1e-41 170.2 113 74.3
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 9.1e-41 170.2 100 79.0
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 9.1e-41 170.2 106 76.4
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.0e-40 169.1 100 78.0
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.6e-40 168.7 106 74.5
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.6e-40 168.7 106 74.5
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 3.4e-40 168.3 106 74.5
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 3.4e-40 168.3 103 73.8
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 4.5e-40 167.9 112 67.9
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 7.7e-40 167.2 106 71.7
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.3e-39 166.4 110 71.8
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 1.7e-39 166.0 100 76.0
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.7e-39 166.0 106 70.8
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 2.2e-39 165.6 101 77.2
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 2.9e-39 165.2 105 74.3
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 2.9e-39 165.2 100 77.0
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 3.8e-39 164.9 96 79.2
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 5.0e-39 164.5 85 83.5
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 5.0e-39 164.5 85 83.5
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 8.5e-39 163.7 112 74.1
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 8.5e-39 163.7 112 74.1
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 8.5e-39 163.7 96 79.2
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 8.5e-39 163.7 108 73.1
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 8.5e-39 163.7 106 72.6
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 1.1e-38 163.3 108 72.2
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.4e-38 162.9 96 77.1
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.4e-38 162.9 118 67.8
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 1.4e-38 162.9 107 72.9
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.5e-38 162.2 106 70.8
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.5e-38 162.2 95 77.9
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 2.5e-38 162.2 109 72.5
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 3.2e-38 161.8 111 70.3
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 4.2e-38 161.4 107 70.1
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 4.2e-38 161.4 107 70.1
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 4.2e-38 161.4 96 77.1
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 4.2e-38 161.4 108 71.3
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 5.5e-38 161.0 107 72.9
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 5.5e-38 161.0 106 70.8
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 7.2e-38 160.6 107 71.0
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 7.2e-38 160.6 83 84.3
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 7.2e-38 160.6 94 77.7
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 9.4e-38 160.2 109 70.6
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.2e-37 159.8 99 72.7
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 1.2e-37 159.8 104 73.1
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.6e-37 159.5 98 76.5
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 2.1e-37 159.1 102 73.5
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 2.1e-37 159.1 112 66.1
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 3.6e-37 158.3 106 69.8
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 4.7e-37 157.9 88 76.1
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.0e-36 156.8 105 70.5
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.0e-36 156.8 101 71.3
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.0e-36 156.8 101 71.3
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 1.0e-36 156.8 111 67.6
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.4e-36 156.4 94 75.5
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.8e-36 156.0 99 73.7
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 1.8e-36 156.0 85 78.8
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 2.3e-36 155.6 106 67.9
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 2.3e-36 155.6 86 77.9
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 2.3e-36 155.6 115 64.3
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 5.1e-36 154.5 103 68.9
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 6.7e-36 154.1 102 70.6
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 6.7e-36 154.1 119 65.5
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 6.7e-36 154.1 103 72.8
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 8.8e-36 153.7 84 79.8
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.1e-35 153.3 108 67.6
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.1e-35 153.3 93 75.3
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.5e-35 152.9 106 67.9
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.0e-35 152.5 113 63.7
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.6e-35 152.1 101 71.3
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 3.3e-35 151.8 116 66.4
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 3.3e-35 151.8 94 74.5
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 3.3e-35 151.8 96 74.0
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 4.4e-35 151.4 101 71.3
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 7.4e-35 150.6 99 67.7
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 9.7e-35 150.2 104 67.3
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.3e-34 149.8 105 66.7
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.7e-34 149.4 107 66.4
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.8e-34 148.7 102 65.7
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 2.8e-34 148.7 97 71.1
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 3.7e-34 148.3 123 61.0
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 3.7e-34 148.3 112 63.4
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 3.7e-34 148.3 82 79.3
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 4.8e-34 147.9 111 63.1
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.4e-33 146.4 96 70.8
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.8e-33 146.0 77 80.5
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.8e-33 146.0 114 63.2
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.4e-33 145.6 99 67.7
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 2.4e-33 145.6 80 77.5
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.1e-33 145.2 96 69.8
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 7.0e-33 144.1 98 67.3
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 7.0e-33 144.1 96 69.8
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 2.0e-32 142.5 96 68.8
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 2.0e-32 142.5 96 68.8
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 7.7e-32 140.6 107 65.4
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.7e-31 139.4 96 68.8
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 2.2e-31 139.0 104 63.5
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.8e-31 138.3 96 67.7
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 8.5e-31 137.1 85 70.6
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 4.7e-29 131.3 78 69.2
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 2.3e-28 129.0 65 95.4
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 8.8e-28 127.1 82 73.2
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.5e-27 126.3 113 56.6
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.0e-27 125.9 78 66.7
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 1.6e-24 116.3 78 66.7
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 9.4e-22 107.1 70 72.9
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 3.6e-21 105.1 69 68.1
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 4.4e-19 98.2 102 46.1
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-18 96.7 70 74.3
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 1.7e-18 96.3 80 55.0
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.2e-18 95.9 76 63.2
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 4.8e-18 94.7 115 55.7
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 1.8e-17 92.8 53 77.4
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 9.1e-17 90.5 104 47.1
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 1.1e-14 83.6 73 50.7
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 4.0e-12 75.1 65 55.4
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 8.8e-12 73.9 64 53.1
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 5.4e-09 64.7 59 57.6
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 4.5e-08 61.6 61 52.5


User provided reference genes

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