Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-81 306.6 165 100.0
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 3.4e-81 305.1 165 99.4
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.3e-80 303.1 165 98.8
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 4.2e-76 288.1 165 95.2
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 3.6e-75 285.0 165 94.5
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 7.7e-70 267.3 167 90.4
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.5e-57 224.2 166 76.5
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 2.8e-51 205.7 173 71.1
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.8e-49 198.0 171 70.8
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.1e-47 193.7 166 71.1
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 4.7e-35 151.8 175 55.4
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.4e-34 149.4 175 54.9
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 5.8e-33 144.8 178 53.4
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 7.6e-33 144.4 177 53.1
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.2e-32 142.9 178 53.9
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 2.9e-32 142.5 187 54.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-31 140.6 162 55.6
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.4e-31 138.3 185 53.5
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.0e-29 134.0 167 52.1
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 1.7e-29 133.3 179 52.0
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 2.3e-29 132.9 179 52.0
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 3.0e-29 132.5 188 51.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.1e-28 130.6 182 52.2
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 5.6e-28 128.3 177 51.4
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.3e-27 127.1 174 53.4
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.3e-27 127.1 202 48.0
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.1e-27 126.3 165 52.1
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.8e-27 125.9 166 53.0
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 3.1e-26 122.5 159 52.2
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 4.0e-26 122.1 162 50.6
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 9.0e-26 120.9 177 48.6
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 5.8e-25 118.2 160 50.6
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 6.2e-19 98.2 198 36.9
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 6.2e-19 98.2 190 40.5
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 9.0e-18 94.4 184 47.8
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.5e-17 93.6 182 40.7
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.6e-17 92.8 190 40.5
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 7.6e-17 91.3 191 38.2
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.7e-16 90.1 187 38.5
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.2e-16 89.7 196 38.3
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 2.2e-16 89.7 191 37.7
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.9e-16 89.4 196 38.3
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.8e-16 89.0 185 40.5
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 8.4e-16 87.8 165 41.8
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 8.4e-16 87.8 187 40.1
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.4e-15 87.0 193 37.8
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.4e-15 87.0 183 39.3
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.9e-15 86.7 184 41.8
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.9e-15 86.7 201 39.3
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 3.2e-15 85.9 187 38.5
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 3.2e-15 85.9 186 40.9
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 5.5e-15 85.1 186 39.8
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 5.5e-15 85.1 170 42.4
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 5.5e-15 85.1 187 35.8
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.1e-15 84.7 179 40.2
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.1e-15 84.7 197 38.1
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.1e-15 84.7 179 40.2
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 9.3e-15 84.3 190 39.5
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.2e-14 84.0 189 39.7
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.2e-14 84.0 179 39.7
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.6e-14 83.6 193 39.4
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.6e-14 83.6 121 47.9
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 2.7e-14 82.8 165 41.8
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 3.5e-14 82.4 188 38.3
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.5e-14 82.4 179 38.5
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.6e-14 82.0 200 33.0
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.6e-14 82.0 195 35.9
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.6e-14 82.0 175 37.7
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 4.6e-14 82.0 187 36.4
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 6.0e-14 81.6 180 40.0
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 7.9e-14 81.3 182 39.0
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 7.9e-14 81.3 175 39.4
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 7.9e-14 81.3 177 37.9
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.0e-13 80.9 177 40.7
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.0e-13 80.9 182 39.0
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 1.0e-13 80.9 178 37.1
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.8e-13 80.1 73 54.8
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.8e-13 80.1 186 38.2
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 3.0e-13 79.3 187 36.9
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 3.0e-13 79.3 178 39.3
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 3.0e-13 79.3 177 40.1
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.1e-13 78.6 175 41.7
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 5.1e-13 78.6 167 35.9
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 8.7e-13 77.8 194 34.0
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 8.7e-13 77.8 186 38.7
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 8.7e-13 77.8 183 36.1
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-12 77.4 183 38.8
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.1e-12 77.4 185 36.2
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.5e-12 77.0 185 36.2
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.9e-12 76.6 170 42.4
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.9e-12 76.6 166 39.8
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.9e-12 76.6 166 39.8
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 2.5e-12 76.3 188 38.3
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.5e-12 76.3 183 35.0
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.5e-12 76.3 183 35.5
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 3.3e-12 75.9 198 35.4
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 4.3e-12 75.5 185 35.1
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.3e-12 75.5 175 34.9
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 5.6e-12 75.1 180 36.1
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 5.6e-12 75.1 185 39.5
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 5.6e-12 75.1 202 35.6
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 7.4e-12 74.7 191 36.6
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 9.6e-12 74.3 170 37.6
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 9.6e-12 74.3 188 36.2
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.3e-11 73.9 209 34.9
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.3e-11 73.9 186 35.5
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-11 73.6 196 35.7
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.6e-11 73.6 202 34.7
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.6e-11 73.6 185 35.7
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.6e-11 73.6 174 38.5
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 2.1e-11 73.2 184 35.3
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 2.8e-11 72.8 168 38.1
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.8e-11 72.8 177 36.2
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 2.8e-11 72.8 194 34.0
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 3.7e-11 72.4 176 39.2
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.8e-11 72.0 177 36.7
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 6.2e-11 71.6 185 33.5
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 8.1e-11 71.2 170 39.4
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 1.4e-10 70.5 209 35.9
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.4e-10 70.5 169 39.1
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.4e-10 70.5 183 35.0
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.8e-10 70.1 208 32.2
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.8e-10 70.1 209 35.9
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.4e-10 69.7 208 33.2
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.4e-10 69.7 193 33.2
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.4e-10 69.7 109 45.0
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.1e-10 69.3 190 31.6
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 3.1e-10 69.3 193 32.6
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 4.0e-10 68.9 188 35.6
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 4.0e-10 68.9 76 52.6
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 4.0e-10 68.9 193 34.2
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.0e-10 68.9 144 36.1
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 5.3e-10 68.6 213 32.9
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 5.3e-10 68.6 177 37.3
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.2e-09 67.4 183 35.0
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.2e-09 67.4 84 44.0
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.2e-09 67.4 207 32.9
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.5e-09 67.0 172 34.9
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.5e-09 67.0 175 36.6
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.0e-09 66.6 143 37.1
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.0e-09 66.6 193 32.6
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.0e-09 66.6 193 32.6
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 2.0e-09 66.6 187 33.7
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.0e-09 66.6 195 32.3
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 3.4e-09 65.9 169 36.1
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 4.5e-09 65.5 174 33.3
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 4.5e-09 65.5 181 33.1
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 5.8e-09 65.1 180 35.0
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 5.8e-09 65.1 194 34.5
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 5.8e-09 65.1 174 35.1
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.0e-08 64.3 165 35.2
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.7e-08 63.5 190 30.0
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.7e-08 63.5 190 30.0
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.7e-08 63.5 190 30.0
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.7e-08 63.5 70 52.9
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.9e-08 62.8 188 35.1
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.9e-08 62.8 177 33.9
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.9e-08 62.8 177 33.9
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 3.8e-08 62.4 224 32.1
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.8e-08 62.4 149 34.2
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 6.5e-08 61.6 216 32.9
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 6.5e-08 61.6 216 32.9
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 8.4e-08 61.2 217 32.7
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 8.4e-08 61.2 179 36.9
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 8.4e-08 61.2 169 34.9
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.2e-07 59.3 70 47.1
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 3.2e-07 59.3 75 48.0
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 4.2e-07 58.9 60 51.7
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 4.2e-07 58.9 179 31.8
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 4.2e-07 58.9 67 50.7
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 9.3e-07 57.8 94 43.6
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 9.3e-07 57.8 126 38.1
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 1.2e-06 57.4 37 75.7
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.2e-06 57.4 87 39.1
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.6e-06 57.0 157 36.3
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.7e-06 56.2 90 45.6
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 6.0e-06 55.1 192 30.2
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 7.9e-06 54.7 81 44.4


User provided reference genes

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