Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p03260 Brassica napus HOM05D007306 ORTHO05D009112 3.6e-68 261.5 139 100.0
BcaC02g12458 Brassica carinata HOM05D007306 ORTHO05D009112 4.0e-67 258.1 139 98.6
BcaC02g12459 Brassica carinata HOM05D007306 ORTHO05D009112 4.0e-67 258.1 139 98.6
BolC4t21964H Brassica oleracea HOM05D007306 ORTHO05D009112 4.0e-67 258.1 139 98.6
A05p02730 Brassica napus HOM05D007306 ORTHO05D009112 1.7e-62 242.7 140 92.9
BraA05t19265Z Brassica rapa HOM05D007306 ORTHO05D009112 1.7e-62 242.7 140 92.9
BcaNung04408 Brassica carinata HOM05D007306 ORTHO05D009112 1.7e-57 226.1 140 87.1
Sp4g24320 Schrenkiella parvula HOM05D007306 ORTHO05D009112 4.3e-53 211.5 141 85.8
AL4G40480 Arabidopsis lyrata HOM05D007306 ORTHO05D009112 2.9e-49 198.7 141 79.4
AT2G42110 Arabidopsis thaliana HOM05D007306 ORTHO05D009112 4.9e-49 198.0 141 77.3
CARHR137170 Cardamine hirsuta HOM05D007306 ORTHO05D009112 5.0e-46 188.0 140 78.6
Thhalv10017403m.g Eutrema salsugineum HOM05D007306 ORTHO05D009112 5.0e-46 188.0 142 78.9
Aa31LG1G24110 Aethionema arabicum HOM05D007306 ORTHO05D009112 2.3e-43 179.1 144 70.8
Carub.0004s2445 Capsella rubella HOM05D007306 ORTHO05D009112 7.8e-39 164.1 143 68.5
Atru.chr8.1112 Acer truncatum HOM05D007306 ORTHO05D009112 2.0e-26 122.9 137 53.3
THA.LOC104802563 Tarenaya hassleriana HOM05D007306 ORTHO05D009112 4.9e-25 118.2 137 54.7
Gohir.A01G191300 Gossypium hirsutum HOM05D007306 ORTHO05D009112 2.4e-24 115.9 159 49.1
Gorai.002G224300 Gossypium raimondii HOM05D007306 ORTHO05D009112 4.1e-24 115.2 159 49.1
PGR004G2053 Punica granatum HOM05D007306 ORTHO05D009112 5.4e-24 114.8 138 52.2
Gohir.D01G178600 Gossypium hirsutum HOM05D007306 ORTHO05D009112 9.2e-24 114.0 159 49.1
Nn2g15686 Nelumbo nucifera HOM05D007306 ORTHO05D009112 2.1e-23 112.8 140 50.0
QL07p023738 Quercus lobata HOM05D007306 ORTHO05D009112 3.5e-23 112.1 141 52.5
Cfa020165 Carpinus fangiana HOM05D007306 ORTHO05D009112 6.0e-23 111.3 140 51.4
MD12G1057100 Malus domestica HOM05D007306 ORTHO05D009112 6.0e-23 111.3 141 49.6
TWI74G1393 Tripterygium wilfordii HOM05D007306 ORTHO05D009112 1.7e-22 109.8 134 55.2
CiPaw.09G030300 Carya illinoinensis HOM05D007306 ORTHO05D009112 3.0e-22 109.0 137 51.1
Thecc.05G171400 Theobroma cacao HOM05D007306 ORTHO05D009112 3.0e-22 109.0 146 50.0
TAR623G0307 Trochodendron aralioides HOM05D007306 ORTHO05D009112 3.9e-22 108.6 137 50.4
CANSAT64G1677 Cannabis sativa HOM05D007306 ORTHO05D009112 5.1e-22 108.2 141 48.2
FvH4_6g22320 Fragaria vesca HOM05D007306 ORTHO05D009112 8.6e-22 107.5 145 46.9
RcHm_v2.0_Chr3g0479681 Rosa chinensis HOM05D007306 ORTHO05D009112 8.6e-22 107.5 139 48.2
Duzib093G0428 Durio zibethinus HOM05D007306 ORTHO05D009112 1.1e-21 107.1 144 48.6
FAN05G3567 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.5e-21 106.7 144 47.2
FAN14G0362 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.9e-21 106.3 144 46.5
Peaxi162Scf00258g00720 Petunia axillaris HOM05D007306 ORTHO05D009112 2.5e-21 105.9 140 47.9
Hma1.2p1_0386F.1_g141880 Hydrangea macrophylla HOM05D007306 ORTHO05D009112 4.3e-21 105.1 136 49.3
Cpa.g.sc85.66 Carica papaya HOM05D007306 ORTHO05D009112 5.6e-21 104.8 136 47.8
FAN09G2453 Fragaria x ananassa HOM05D007306 ORTHO05D009112 9.6e-21 104.0 141 44.7
COL.COLO4_33982 Corchorus olitorius HOM05D007306 ORTHO05D009112 1.2e-20 103.6 146 49.3
Potri.006G192500 Populus trichocarpa HOM05D007306 ORTHO05D009112 1.6e-20 103.2 148 47.3
PSO384G4645 Papaver somniferum HOM05D007306 ORTHO05D009112 3.6e-20 102.1 142 47.2
Aqoxy1G00127 Aquilegia oxysepala HOM05D007306 ORTHO05D009112 4.7e-20 101.7 141 46.8
FAN02G3291 Fragaria x ananassa HOM05D007306 ORTHO05D009112 4.7e-20 101.7 143 45.5
Lalb_Chr18g0047871 Lupinus albus HOM05D007306 ORTHO05D009112 4.7e-20 101.7 138 47.8
PSO339G5155 Papaver somniferum HOM05D007306 ORTHO05D009112 4.7e-20 101.7 142 45.8
Lj1g0014955 Lotus japonicus HOM05D007306 ORTHO05D009112 2.4e-19 99.4 129 48.8
Dinv14300 Davidia involucrata HOM05D007306 ORTHO05D009112 5.2e-19 98.2 136 45.6
MD14G1057700 Malus domestica HOM05D007306 ORTHO05D009112 5.2e-19 98.2 140 50.7
Manes.08G044500 Manihot esculenta HOM05D007306 ORTHO05D009112 6.8e-19 97.8 148 46.6
Glyma.09G111500 Glycine max HOM05D007306 ORTHO05D009112 8.9e-19 97.4 129 46.5
Prupe.7G077000 Prunus persica HOM05D007306 ORTHO05D009112 8.9e-19 97.4 141 44.7
HanXRQChr13g0390881 Helianthus annuus HOM05D007306 ORTHO05D009112 2.0e-18 96.3 138 41.3
Potri.016G045700 Populus trichocarpa HOM05D007306 ORTHO05D009112 2.0e-18 96.3 149 43.6
CiPaw.10G026400 Carya illinoinensis HOM05D007306 ORTHO05D009112 3.4e-18 95.5 140 46.4
Ciclev10013031m.g Citrus clementina HOM05D007306 ORTHO05D009112 3.4e-18 95.5 142 47.2
Glyma.03G144700 Glycine max HOM05D007306 ORTHO05D009112 3.4e-18 95.5 138 47.1
Psat3g068560 Pisum sativum HOM05D007306 ORTHO05D009112 3.4e-18 95.5 129 45.0
vmacro07907 Vaccinium macrocarpon HOM05D007306 ORTHO05D009112 3.4e-18 95.5 130 46.2
Phvul.007G259800 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 4.4e-18 95.1 136 46.3
Sopen03g039780 Solanum pennellii HOM05D007306 ORTHO05D009112 4.4e-18 95.1 125 48.0
Actinidia32393 Actinidia chinensis HOM05D007306 ORTHO05D009112 5.8e-18 94.7 136 43.4
TPR.G22157 Trifolium pratense HOM05D007306 ORTHO05D009112 5.8e-18 94.7 135 46.7
Nitab4.5_0001137g0060 Nicotiana tabacum HOM05D007306 ORTHO05D009112 9.9e-18 94.0 134 44.8
Rhsim03G0005900 Rhododendron simsii HOM05D007306 ORTHO05D009112 1.3e-17 93.6 130 48.5
Solyc03g120950.3 Solanum lycopersicum HOM05D007306 ORTHO05D009112 1.3e-17 93.6 125 47.2
Hund24792 Selenicereus undatus HOM05D007306 ORTHO05D009112 1.7e-17 93.2 159 42.8
arahy.Tifrunner.gnm1.ann1.I9AM74 Arachis hypogaea HOM05D007306 ORTHO05D009112 4.9e-17 91.7 146 44.5
Nitab4.5_0007619g0010 Nicotiana tabacum HOM05D007306 ORTHO05D009112 4.9e-17 91.7 141 40.4
Sed0004413 Sechium edule HOM05D007306 ORTHO05D009112 1.1e-16 90.5 139 41.7
arahy.Tifrunner.gnm1.ann1.T0JWFY Arachis hypogaea HOM05D007306 ORTHO05D009112 1.9e-16 89.7 146 44.5
Manes.09G035400 Manihot esculenta HOM05D007306 ORTHO05D009112 3.2e-16 89.0 141 48.9
Migut.J01836 Erythranthe guttata HOM05D007306 ORTHO05D009112 4.2e-16 88.6 134 38.1
PGSC0003DMG400002614 Solanum tuberosum HOM05D007306 ORTHO05D009112 9.3e-16 87.4 125 45.6
Actinidia22036 Actinidia chinensis HOM05D007306 ORTHO05D009112 1.2e-15 87.0 136 41.9
Medtr7g093220 Medicago truncatula HOM05D007306 ORTHO05D009112 1.2e-15 87.0 128 46.1
VMungo1383G3094 Vigna mungo HOM05D007306 ORTHO05D009112 1.2e-15 87.0 128 43.8
Duzib106G0602 Durio zibethinus HOM05D007306 ORTHO05D009112 1.6e-15 86.7 151 40.4
SalBow6G0438 Salvia bowleyana HOM05D007306 ORTHO05D009112 1.6e-15 86.7 129 44.2
SalBow6G2293 Salvia bowleyana HOM05D007306 ORTHO05D009112 1.6e-15 86.7 129 44.2
CAN.G1143.4 Capsicum annuum HOM05D007306 ORTHO05D009112 2.1e-15 86.3 126 42.1
MSTRG.19909 Avicennia marina HOM05D007306 ORTHO05D009112 7.8e-15 84.3 138 42.8
Phvul.001G142300 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 1.0e-14 84.0 129 44.2
VMungo0720G2523 Vigna mungo HOM05D007306 ORTHO05D009112 1.0e-14 84.0 142 38.7
Cc06_g15870 Coffea canephora HOM05D007306 ORTHO05D009112 2.3e-14 82.8 148 41.9
MBI06_g29488_MAGBIO Magnolia biondii HOM05D007306 ORTHO05D009112 6.6e-14 81.3 130 47.7
CsaV3_3G038820 Cucumis sativus L. HOM05D007306 ORTHO05D009112 1.9e-13 79.7 135 38.5
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 4.3e-13 78.6 131 41.2
Sabra16G0049700 Salix brachista HOM05D007306 ORTHO05D009112 5.6e-13 78.2 108 47.2
Lsat_1_v5_gn_5_163480 Lactuca sativa HOM05D007306 ORTHO05D009112 9.6e-13 77.4 134 38.8
MELO3C009626.2 Cucumis melo HOM05D007306 ORTHO05D009112 1.3e-12 77.0 135 39.3
SGA_v2.0_scaffold69G23062 Striga asiatica HOM05D007306 ORTHO05D009112 1.3e-12 77.0 130 38.5
AUR62012035 Chenopodium quinoa HOM05D007306 ORTHO05D009112 2.8e-12 75.9 140 39.3
ClCG10G017530 Citrullus lanatus HOM05D007306 ORTHO05D009112 2.8e-12 75.9 135 37.8
Glyma.19G147700 Glycine max HOM05D007306 ORTHO05D009112 8.1e-12 74.3 126 44.4
Oeu063786.1 Olea europaea HOM05D007306 ORTHO05D009112 4.0e-11 72.0 120 40.0
ECA248G3448 Erigeron canadensis HOM05D007306 ORTHO05D009112 1.2e-10 70.5 142 36.6
GSVIVG01033497001 Vitis vinifera HOM05D007306 ORTHO05D009112 7.6e-10 67.8 136 33.1
Ah.04g152480 Amaranthus hybridus HOM05D007306 ORTHO05D009112 1.3e-09 67.0 165 34.5
Os03g0128300 Oryza sativa ssp. japonica HOM05D007306 ORTHO05D009112 4.9e-09 65.1 153 35.3
AUR62015369 Chenopodium quinoa HOM05D007306 ORTHO05D009112 2.4e-08 62.8 153 33.3
CDE02G0820 Ceratophyllum demersum HOM05D007306 ORTHO05D009112 3.2e-08 62.4 140 35.0
Sed0003989 Sechium edule HOM05D007306 ORTHO05D009112 5.4e-08 61.6 68 45.6
Haze_19991 Corylus avellana HOM05D000267 ORTHO05D000298 4.6e-07 58.5 34 70.6
ATR0807G086 Amborella trichopoda HOM05D007306 ORTHO05D009112 1.0e-06 57.4 130 34.6
EL10Ac3g06917 Beta vulgaris HOM05D007306 ORTHO05D009112 1.3e-06 57.0 162 30.2
Sc19g0007100 Simmondsia chinensis HOM05D007306 ORTHO05D009112 6.6e-06 54.7 115 40.0


User provided reference genes

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