Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 2.0e-120 436.0 260 100.0
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 2.0e-120 436.0 260 100.0
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 2.0e-120 436.0 260 100.0
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.8e-114 415.6 262 95.0
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 2.8e-114 415.6 262 95.0
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 2.1e-85 319.7 275 73.1
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.0e-84 317.4 277 72.9
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 3.9e-84 315.5 274 73.7
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 4.3e-83 312.0 276 72.5
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 1.6e-82 310.1 273 74.4
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 4.2e-78 295.4 281 72.2
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 4.6e-77 292.0 271 73.1
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 1.1e-75 287.3 266 73.7
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 2.6e-72 276.2 269 74.3
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 1.7e-71 273.5 271 73.4
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 4.6e-69 265.4 289 66.8
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 6.3e-66 255.0 268 71.6
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 8.2e-66 254.6 235 71.1
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 1.8e-65 253.4 273 64.5
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.5e-64 250.4 226 77.9
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 3.4e-64 249.2 271 70.1
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 1.4e-54 217.2 270 64.4
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 5.5e-38 162.2 256 55.5
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 1.2e-37 161.0 286 47.9
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.2e-32 144.4 318 39.3
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.8e-31 139.4 308 40.6
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.1e-21 107.1 271 42.1
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.1e-21 107.1 122 54.1
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 2.8e-21 106.7 337 34.4
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 8.0e-21 105.1 86 64.0
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 4.0e-20 102.8 129 50.4
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 4.0e-20 102.8 106 55.7
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.2e-20 102.4 274 36.9
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 5.2e-20 102.4 121 51.2
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 6.8e-20 102.1 275 36.0
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 6.8e-20 102.1 103 56.3
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 6.8e-20 102.1 117 50.4
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.2e-19 101.3 343 32.7
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.2e-19 101.3 126 50.8
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.5e-19 100.9 361 31.3
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.5e-19 100.9 108 53.7
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.5e-19 100.9 90 62.2
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 2.0e-19 100.5 348 39.7
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.0e-19 100.5 275 35.6
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 2.0e-19 100.5 348 31.9
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 2.0e-19 100.5 119 51.3
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 2.6e-19 100.1 134 48.5
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.6e-19 100.1 358 30.2
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 4.4e-19 99.4 349 34.4
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 5.8e-19 99.0 96 59.4
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 7.5e-19 98.6 125 49.6
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 9.8e-19 98.2 264 34.1
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.3e-18 97.8 272 34.9
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 1.3e-18 97.8 278 34.9
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.3e-18 97.8 337 32.9
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 2.2e-18 97.1 132 47.7
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.2e-18 97.1 120 49.2
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 2.9e-18 96.7 130 46.2
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.7e-18 96.3 142 43.7
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.7e-18 96.3 109 52.3
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 3.7e-18 96.3 347 31.7
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 4.9e-18 95.9 320 33.4
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 6.4e-18 95.5 128 48.4
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 8.3e-18 95.1 122 47.5
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 8.3e-18 95.1 331 34.4
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.1e-17 94.7 134 45.5
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.1e-17 94.7 134 45.5
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 1.1e-17 94.7 301 33.6
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.1e-17 94.7 96 56.2
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.1e-17 94.7 96 56.2
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.4e-17 94.4 120 49.2
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.4e-17 94.4 355 30.7
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.4e-17 94.4 347 31.1
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 1.8e-17 94.0 140 44.3
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 2.4e-17 93.6 115 49.6
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 2.4e-17 93.6 341 33.4
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 3.2e-17 93.2 321 36.8
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 3.2e-17 93.2 335 36.4
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 3.2e-17 93.2 141 41.8
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 3.2e-17 93.2 144 43.1
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 4.1e-17 92.8 123 48.0
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 4.1e-17 92.8 122 49.2
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 5.4e-17 92.4 127 47.2
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 5.4e-17 92.4 141 42.6
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 7.0e-17 92.0 134 43.3
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 7.0e-17 92.0 132 45.5
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 7.0e-17 92.0 318 34.3
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 7.0e-17 92.0 116 49.1
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 7.0e-17 92.0 124 46.0
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 9.2e-17 91.7 124 47.6
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 9.2e-17 91.7 135 43.0
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.6e-16 90.9 132 44.7
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 2.0e-16 90.5 120 45.8
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 2.7e-16 90.1 121 47.1
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 2.7e-16 90.1 140 42.1
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 2.7e-16 90.1 128 48.4
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 2.7e-16 90.1 45 86.7
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 2.7e-16 90.1 105 50.5
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 2.7e-16 90.1 360 30.6
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.6e-16 89.4 108 50.0
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 4.6e-16 89.4 106 50.9
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 6.0e-16 89.0 103 51.5
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 7.8e-16 88.6 109 48.6
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 7.8e-16 88.6 157 39.5
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.0e-15 88.2 100 52.0
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 1.0e-15 88.2 122 46.7
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.0e-15 88.2 122 45.1
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.3e-15 87.0 140 40.0
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 3.0e-15 86.7 156 38.5
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.0e-15 86.7 355 34.1
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 3.0e-15 86.7 338 30.8
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 3.9e-15 86.3 122 44.3
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 3.9e-15 86.3 364 29.1
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 5.0e-15 85.9 50 74.0
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 5.0e-15 85.9 122 45.9
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 5.0e-15 85.9 121 44.6
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 6.6e-15 85.5 95 51.6
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.6e-15 85.5 141 43.3
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 8.6e-15 85.1 140 38.6
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 8.6e-15 85.1 387 27.9
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 1.1e-14 84.7 298 30.9
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 1.1e-14 84.7 44 84.1
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 1.5e-14 84.3 121 46.3
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 1.5e-14 84.3 119 43.7
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 1.5e-14 84.3 396 33.8
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 1.5e-14 84.3 308 34.1
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 3.3e-14 83.2 54 72.2
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 3.3e-14 83.2 45 80.0
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 4.3e-14 82.8 241 29.5
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 4.3e-14 82.8 108 44.4
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.3e-14 82.8 133 40.6
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 4.3e-14 82.8 49 79.6
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.6e-14 82.4 90 53.3
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 5.6e-14 82.4 43 81.4
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 7.3e-14 82.0 367 29.4
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 7.3e-14 82.0 390 27.4
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 7.3e-14 82.0 45 77.8
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 9.5e-14 81.6 48 79.2
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.6e-13 80.9 126 43.7
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.1e-13 80.5 366 27.9
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.1e-13 80.5 367 28.3
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 2.8e-13 80.1 149 38.9
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 2.8e-13 80.1 112 45.5
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 2.8e-13 80.1 50 70.0
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.6e-13 79.7 87 52.9
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.6e-13 79.7 50 68.0
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 4.7e-13 79.3 286 30.4
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 6.2e-13 79.0 149 38.9
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.4e-12 77.8 297 30.3
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.4e-12 77.8 44 79.5
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.4e-12 77.8 47 72.3
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.4e-12 77.8 66 60.6
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 3.1e-12 76.6 320 31.2
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 3.1e-12 76.6 40 82.5
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 3.1e-12 76.6 40 82.5
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 6.8e-12 75.5 48 66.7
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.2e-11 74.7 91 45.1
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.4e-11 73.2 49 61.2
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.4e-11 73.2 48 62.5
BcaB01g03437 Brassica carinata HOM05D003648 ORTHO05D004267 1.1e-09 68.2 62 72.6
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.1e-09 68.2 50 60.0
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.1e-09 66.2 46 58.7
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 1.6e-08 64.3 275 30.5
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 7.8e-08 62.0 102 40.2
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.7e-07 60.8 68 44.1
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 6.6e-07 58.9 84 42.9
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 8.6e-07 58.5 52 57.7
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 4.3e-06 56.2 37 59.5
SMO165G0054 Selaginella moellendorffii HOM05D013917 ORTHO05D004267 7.3e-06 55.5 81 39.5


User provided reference genes

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