Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 2.0e-123 446.0 271 100.0
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 2.0e-123 446.0 271 100.0
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 1.1e-105 387.1 271 90.0
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.4e-105 386.7 270 90.4
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 1.0e-90 337.4 271 83.0
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.0e-75 286.6 272 73.5
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.7e-70 268.5 274 74.1
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 9.7e-70 267.7 278 71.6
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.8e-63 246.9 287 69.7
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 3.8e-58 229.2 288 66.0
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.8e-56 223.0 285 66.3
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 8.6e-42 174.9 280 54.6
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 1.2e-38 164.5 258 53.5
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.7e-37 159.5 296 53.7
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 6.4e-37 158.7 302 52.6
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 3.2e-36 156.4 255 54.1
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 5.4e-36 155.6 300 54.7
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.2e-35 154.5 306 52.9
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 4.6e-35 152.5 205 51.2
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 1.0e-34 151.4 255 52.9
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 1.3e-34 151.0 296 51.4
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.3e-34 151.0 278 49.6
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.7e-34 150.6 261 52.5
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 2.3e-34 150.2 305 52.5
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 2.3e-34 150.2 305 52.5
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 2.3e-34 150.2 305 52.5
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 2.5e-33 146.7 304 52.0
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 5.6e-33 145.6 255 54.1
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 5.6e-33 145.6 279 45.9
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 7.3e-33 145.2 304 52.0
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.1e-32 143.7 202 48.0
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.1e-32 143.7 298 50.7
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 4.0e-31 139.4 303 48.5
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 8.9e-31 138.3 191 47.1
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 1.3e-29 134.4 305 49.5
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 1.7e-29 134.0 274 50.0
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.1e-28 131.3 214 44.4
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.4e-28 131.0 302 49.7
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 3.2e-28 129.8 202 45.5
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 3.2e-28 129.8 261 45.2
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 4.1e-28 129.4 255 50.6
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 5.4e-28 129.0 198 50.0
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.2e-27 127.9 262 49.2
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 2.1e-27 127.1 282 47.9
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 2.1e-27 127.1 284 47.2
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 2.7e-27 126.7 260 48.5
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 2.7e-27 126.7 281 44.5
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 3.5e-27 126.3 252 48.0
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 1.0e-26 124.8 270 45.2
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.0e-26 124.8 258 49.6
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.3e-26 124.4 270 45.2
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.9e-26 122.9 272 49.3
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 5.1e-26 122.5 257 49.0
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 5.1e-26 122.5 266 45.5
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 1.1e-25 121.3 279 44.1
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.5e-25 120.9 258 49.2
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 1.5e-25 120.9 276 46.0
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.9e-25 120.6 253 50.6
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.9e-25 120.6 273 49.8
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 2.5e-25 120.2 267 47.2
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 7.3e-25 118.6 260 49.2
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 9.5e-25 118.2 259 49.0
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 9.5e-25 118.2 259 49.0
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 9.5e-25 118.2 280 43.9
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.6e-24 117.5 273 46.5
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 2.1e-24 117.1 197 46.7
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 2.1e-24 117.1 272 48.2
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.8e-24 116.7 269 48.3
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 3.6e-24 116.3 263 44.1
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 3.6e-24 116.3 285 43.5
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 3.6e-24 116.3 270 46.7
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 4.7e-24 115.9 266 46.6
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 6.2e-24 115.5 268 44.4
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 6.2e-24 115.5 282 44.0
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 8.1e-24 115.2 263 45.2
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.1e-23 114.8 265 46.8
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 2.4e-23 113.6 273 44.7
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 2.4e-23 113.6 264 46.2
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.4e-23 113.6 264 48.1
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 4.0e-23 112.8 279 45.5
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.8e-23 112.1 272 46.3
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 1.2e-22 111.3 265 47.5
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.5e-22 110.9 260 46.9
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 1.5e-22 110.9 251 48.6
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 1.5e-22 110.9 254 44.9
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.5e-22 110.9 261 47.9
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.0e-22 110.5 253 47.4
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 2.6e-22 110.2 149 47.7
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.6e-22 110.2 244 35.7
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.6e-22 110.2 261 46.4
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 3.4e-22 109.8 250 36.8
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 4.4e-22 109.4 153 47.7
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.8e-22 109.0 310 41.9
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 7.6e-22 108.6 264 44.3
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 7.6e-22 108.6 201 40.8
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 9.9e-22 108.2 197 42.6
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.3e-21 107.8 217 38.2
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.3e-21 107.8 310 41.9
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.3e-21 107.8 261 45.2
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.3e-21 107.8 250 46.4
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.7e-21 107.5 280 41.8
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.7e-21 107.5 277 42.6
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.2e-21 107.1 274 46.0
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.2e-21 107.1 262 49.2
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 2.9e-21 106.7 288 45.8
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.9e-21 106.7 262 46.2
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 3.8e-21 106.3 297 44.1
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 3.8e-21 106.3 298 43.3
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.8e-21 106.3 298 43.3
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.8e-21 106.3 261 48.3
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 4.9e-21 105.9 267 45.3
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.9e-21 105.9 310 41.6
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 6.4e-21 105.5 254 46.9
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 6.4e-21 105.5 220 45.9
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 8.4e-21 105.1 198 40.4
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 1.1e-20 104.8 254 44.1
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.9e-20 104.0 264 45.8
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 2.4e-20 103.6 270 43.3
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 4.2e-20 102.8 273 46.2
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 7.1e-20 102.1 262 45.0
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 9.2e-20 101.7 180 44.4
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 1.6e-19 100.9 294 41.8
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.6e-19 100.9 252 40.9
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.6e-19 100.9 290 42.1
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 4.6e-19 99.4 251 48.2
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 6.0e-19 99.0 266 44.4
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 7.8e-19 98.6 293 39.2
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 7.8e-19 98.6 269 45.4
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 7.8e-19 98.6 257 45.5
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 1.0e-18 98.2 260 45.8
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.3e-18 97.8 257 44.7
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.3e-18 97.1 124 58.1
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 2.3e-18 97.1 133 54.9
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 3.0e-18 96.7 262 42.4
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 3.0e-18 96.7 274 44.2
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 5.1e-18 95.9 289 42.9
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 6.6e-18 95.5 142 50.0
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 8.7e-18 95.1 197 40.1
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 8.7e-18 95.1 265 39.2
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 1.5e-17 94.4 253 43.9
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 1.9e-17 94.0 253 46.6
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 2.5e-17 93.6 219 50.7
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 4.3e-17 92.8 310 36.8
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.6e-16 90.9 286 39.9
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 6.9e-15 85.5 284 40.1
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 6.9e-15 85.5 296 41.9
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 2.0e-14 84.0 284 39.8
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.0e-14 84.0 270 43.7
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 4.4e-14 82.8 250 42.8
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.4e-14 82.8 267 39.0
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 9.9e-14 81.6 253 44.3
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 1.3e-13 81.3 55 72.7
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.3e-13 81.3 279 39.4
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 8.4e-13 78.6 223 40.8
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 8.4e-13 78.6 159 38.4
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 8.4e-13 78.6 279 40.1
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.1e-12 78.2 162 54.3
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.1e-12 78.2 290 38.6
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 5.4e-12 75.9 301 39.5
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 7.8e-11 72.0 164 34.1
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 6.6e-10 68.9 55 63.6
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 8.7e-10 68.6 175 49.1
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 3.1e-07 60.1 166 32.5
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 5.8e-06 55.8 67 49.3


User provided reference genes

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