Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 2.6e-24 114.4 51 100.0
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 5.6e-19 96.7 47 87.2
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 6.2e-18 93.2 45 86.7
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 8.1e-18 92.8 47 85.1
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 1.4e-17 92.0 42 90.5
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.8e-17 91.7 44 86.4
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 4.0e-17 90.5 44 86.4
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 5.2e-17 90.1 42 88.1
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 5.2e-17 90.1 42 88.1
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 1.2e-16 89.0 42 88.1
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 1.2e-16 89.0 42 88.1
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 3.8e-15 84.0 44 77.3
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 7.1e-14 79.7 39 82.1
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 7.1e-14 79.7 39 82.1
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 7.1e-14 79.7 39 82.1
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 9.2e-14 79.3 38 86.8
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 9.2e-14 79.3 42 73.8
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.2e-13 79.0 39 82.1
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 1.6e-13 78.6 39 76.9
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 1.6e-13 78.6 39 79.5
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 1.6e-13 78.6 39 79.5
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.6e-13 78.6 39 82.1
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.6e-13 78.6 39 79.5
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 1.6e-13 78.6 39 79.5
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 1.6e-13 78.6 39 79.5
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.6e-13 78.6 39 79.5
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 1.6e-13 78.6 39 79.5
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.6e-13 78.6 39 79.5
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 1.6e-13 78.6 39 79.5
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 2.1e-13 78.2 39 79.5
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 2.1e-13 78.2 39 79.5
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.1e-13 78.2 39 79.5
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 2.1e-13 78.2 39 79.5
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 2.1e-13 78.2 39 79.5
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 2.7e-13 77.8 39 76.9
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 2.7e-13 77.8 39 76.9
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 3.5e-13 77.4 45 68.9
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 4.6e-13 77.0 39 76.9
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 4.6e-13 77.0 39 76.9
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 4.6e-13 77.0 39 76.9
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 4.6e-13 77.0 39 76.9
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 6.0e-13 76.6 39 74.4
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 6.0e-13 76.6 39 76.9
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 6.0e-13 76.6 40 77.5
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 6.0e-13 76.6 39 79.5
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 6.0e-13 76.6 40 75.0
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 7.8e-13 76.3 39 74.4
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 7.8e-13 76.3 39 76.9
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 7.8e-13 76.3 38 76.3
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 7.8e-13 76.3 39 76.9
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 7.8e-13 76.3 39 76.9
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 7.8e-13 76.3 39 71.8
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.0e-12 75.9 39 74.4
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 1.0e-12 75.9 39 74.4
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 1.0e-12 75.9 39 74.4
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 1.3e-12 75.5 39 74.4
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 1.3e-12 75.5 40 72.5
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 1.3e-12 75.5 39 74.4
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 1.7e-12 75.1 39 71.8
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 1.7e-12 75.1 39 74.4
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.7e-12 75.1 39 71.8
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.7e-12 75.1 39 71.8
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 1.7e-12 75.1 38 73.7
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 2.3e-12 74.7 39 74.4
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 2.3e-12 74.7 39 71.8
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 2.3e-12 74.7 38 76.3
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.0e-12 74.3 39 71.8
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.0e-12 74.3 39 76.9
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 3.0e-12 74.3 39 71.8
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.0e-12 74.3 39 71.8
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.0e-12 74.3 39 71.8
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 3.0e-12 74.3 39 74.4
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 3.0e-12 74.3 39 71.8
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 3.0e-12 74.3 39 71.8
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 3.0e-12 74.3 39 69.2
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 3.0e-12 74.3 39 74.4
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 3.0e-12 74.3 39 74.4
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 3.0e-12 74.3 39 74.4
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.9e-12 73.9 40 72.5
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 5.1e-12 73.6 40 72.5
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 5.1e-12 73.6 40 72.5
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 5.1e-12 73.6 39 74.4
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 6.6e-12 73.2 38 76.3
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 6.6e-12 73.2 39 71.8
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 1.1e-11 72.4 38 71.1
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 1.9e-11 71.6 40 70.0
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 1.9e-11 71.6 38 73.7
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 1.9e-11 71.6 39 71.8
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 1.9e-11 71.6 39 74.4
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 2.5e-11 71.2 38 68.4
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.5e-11 71.2 39 69.2
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 3.3e-11 70.9 38 71.1
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 3.3e-11 70.9 43 65.1
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 3.3e-11 70.9 39 66.7
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 5.6e-11 70.1 39 66.7
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 5.6e-11 70.1 39 66.7
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 7.3e-11 69.7 39 69.2
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 7.3e-11 69.7 39 69.2
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 9.6e-11 69.3 37 67.6
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.6e-11 69.3 39 66.7
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.6e-11 69.3 39 66.7
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 3.6e-10 67.4 43 62.8
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 1.4e-09 65.5 38 63.2
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.5e-08 62.0 31 74.2
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.0e-08 61.6 31 74.2
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 3.4e-08 60.8 43 55.8


User provided reference genes

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