Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 1.2e-214 749.6 385 100.0
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 6.4e-208 727.2 385 97.4
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 8.9e-194 680.2 386 91.2
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 2.0e-193 679.1 386 90.9
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 1.0e-173 613.6 392 84.7
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 4.5e-169 598.2 386 81.6
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 2.5e-167 592.4 383 84.1
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 6.1e-158 561.2 387 78.0
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.5e-156 555.8 387 78.8
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 6.1e-150 534.6 411 73.2
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 3.3e-148 528.9 386 73.8
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 5.0e-144 515.0 347 80.7
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 2.8e-139 499.2 395 68.1
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 4.0e-125 452.2 384 64.8
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 2.8e-110 402.9 400 55.8
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 4.4e-108 395.6 403 54.8
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 7.5e-108 394.8 400 55.5
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 9.8e-108 394.4 404 56.2
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.3e-107 394.0 403 54.3
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 1.3e-107 394.0 403 54.3
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 2.2e-107 393.3 409 52.8
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 1.8e-106 390.2 402 54.0
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 2.4e-106 389.8 409 55.5
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 4.6e-105 385.6 398 55.0
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 1.3e-104 384.0 401 55.1
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 1.7e-104 383.6 407 53.6
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 3.9e-104 382.5 411 52.6
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 6.6e-104 381.7 411 52.6
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 5.6e-103 378.6 405 52.8
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 1.2e-102 377.5 406 52.2
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 2.1e-102 376.7 407 52.8
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 4.7e-102 375.6 405 53.3
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 1.8e-101 373.6 411 51.3
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 8.9e-101 371.3 402 53.0
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 3.4e-100 369.4 405 51.4
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 3.4e-100 369.4 401 52.9
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 4.4e-100 369.0 407 52.1
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 1.3e-99 367.5 404 51.7
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 2.2e-99 366.7 397 51.6
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 3.7e-99 365.9 408 50.2
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 8.3e-99 364.8 403 52.4
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.1e-98 364.4 401 52.6
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.4e-98 364.0 401 52.1
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 3.2e-98 362.8 406 50.2
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 4.1e-98 362.5 407 50.1
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.3e-96 357.5 414 48.8
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 2.3e-96 356.7 406 51.7
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.0e-96 356.3 404 52.0
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 3.9e-96 355.9 390 50.3
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 5.0e-96 355.5 406 48.8
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 8.6e-96 354.8 400 51.0
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 3.3e-95 352.8 401 49.9
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 3.3e-95 352.8 391 51.9
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 5.6e-95 352.1 402 51.5
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 7.3e-95 351.7 398 49.0
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 1.2e-94 350.9 400 50.2
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 2.1e-94 350.1 412 49.0
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.1e-94 350.1 404 51.2
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 2.1e-94 350.1 424 50.7
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 3.6e-94 349.4 407 51.4
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 4.7e-94 349.0 404 50.5
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 6.2e-94 348.6 442 48.0
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 8.1e-94 348.2 407 50.9
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 1.4e-93 347.4 387 50.9
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.3e-93 346.7 442 47.7
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 8.9e-93 344.7 427 48.0
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 1.2e-92 344.4 434 47.2
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.2e-92 344.4 442 47.5
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.5e-92 344.0 436 47.7
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.6e-92 343.2 396 49.7
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 9.9e-92 341.3 404 48.5
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 1.3e-91 340.9 411 49.1
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 1.7e-91 340.5 399 49.1
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 3.7e-91 339.3 403 48.9
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 9.2e-90 334.7 407 48.4
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 1.2e-89 334.3 415 46.3
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 1.6e-89 334.0 396 48.2
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.6e-89 334.0 370 53.0
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.6e-89 334.0 397 49.9
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 2.1e-89 333.6 351 54.1
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 2.7e-89 333.2 405 47.9
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 1.7e-88 330.5 400 48.8
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 3.9e-88 329.3 403 48.1
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.1e-87 327.8 444 45.5
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 1.5e-87 327.4 419 47.3
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 1.5e-87 327.4 407 47.9
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.5e-87 327.4 379 48.5
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 4.3e-87 325.9 409 47.7
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 3.6e-86 322.8 320 55.9
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 3.1e-85 319.7 371 48.5
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 4.0e-85 319.3 383 48.8
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 2.6e-84 316.6 417 46.3
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 4.4e-84 315.8 380 48.7
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 5.8e-84 315.5 392 47.2
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 7.6e-84 315.1 371 50.9
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 1.7e-83 313.9 409 47.2
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 6.4e-83 312.0 359 51.3
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 8.4e-83 311.6 386 47.9
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 7.8e-81 305.1 350 52.3
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 2.4e-77 293.5 505 38.2
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 3.8e-75 286.2 408 41.7
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 8.4e-75 285.0 317 51.7
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.7e-73 280.0 504 38.3
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 9.6e-71 271.6 438 39.0
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 4.6e-65 252.7 384 45.6
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 1.8e-64 250.8 408 41.7
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 9.9e-60 235.0 388 41.5
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.3e-59 234.6 314 46.5
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 8.7e-56 221.9 289 47.1
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 3.7e-54 216.5 345 40.0
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 1.4e-53 214.5 355 42.0
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 1.2e-52 211.5 275 46.9
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 1.5e-52 211.1 226 54.0
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 4.9e-51 206.1 243 48.6
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.5e-47 194.5 435 34.5
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 2.8e-46 190.3 322 38.5
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 7.2e-42 175.6 220 50.5
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.3e-40 170.6 313 38.7
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 2.2e-35 154.1 305 35.1
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 8.2e-30 135.6 127 52.8
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.8e-29 134.4 334 33.2
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.4e-26 124.8 163 47.2
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 3.2e-26 123.6 152 44.7
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 3.2e-26 123.6 152 44.7
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 9.7e-23 112.1 143 47.6
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.8e-21 107.8 119 47.1
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 3.1e-21 107.1 289 28.4
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.5e-19 99.4 115 53.9
Sp4g28240 Schrenkiella parvula HOM05D005133 ORTHO05D006685 1.6e-17 94.7 52 82.7
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 1.4e-16 91.7 98 59.2
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 3.0e-16 90.5 42 88.1
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.2e-15 88.6 153 43.1
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 7.0e-13 79.3 65 69.2
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 7.2e-10 69.3 125 40.0
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.2e-09 68.6 63 57.1
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.7e-09 67.4 93 41.9


User provided reference genes

Program Settings